View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_121 (Length: 290)
Name: NF10233A_low_121
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_121 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 43248961 - 43249231
Alignment:
| Q |
1 |
tcacgcactttgaatgatttagaaagcagaatggccatctcaaacaaagccaaagtcctattatcttaagccattggtgccactactgtagtgctccctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43248961 |
tcacgcactttgaatgatttagaaagcagaatggccatctcaaacaaagccaaagtcctattatcttaagccattggtgccactactgtagtgctccctg |
43249060 |
T |
|
| Q |
101 |
tcaaatgtgcaatgtgttcaaacagatcttcccataattataaaaagcattgtcctccacgaattgatatattatttcacttcactcgctttccaattag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43249061 |
tcaaatgtgcaatgtgttcaaacagatcttcccataattataaagagcattgtcctccacgaattgatatatcatttcacttcactcgctttccaattag |
43249160 |
T |
|
| Q |
201 |
ttcttcttaatgtcaagaagattctcacatttcatcactttcttgtgacttaatttacaacagtgaattga |
271 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43249161 |
ttcttcttaatgtcaagaagattttcacatttcatcactttcttgtgacttaatttacaacagtgaattga |
43249231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University