View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_122 (Length: 290)

Name: NF10233A_low_122
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_122
NF10233A_low_122
[»] chr7 (1 HSPs)
chr7 (12-290)||(30874520-30874800)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 30874800 - 30874520
Alignment:
Q  12 atatagacacaacaatttaacttcatcccatgattttaaaagtctacaattaactataattaatgtggttttcaaagagattaataaataaata--aact 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||    
T  30874800 atatagacacaacaatttaacttcatcccatgattttaaaagtctacaattaactataattaatgtagttttcaaagagattaataaataaatataaact 30874701  T
Q  110 tacattgtttaatcccaccatgaatattttgttgttatgaatactttcctagttgtgagaatggtcgcaagttccaccactttatttgtttctctgtctc 209  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30874700 tacattgtttaatcccaccatgaatattttattgttatgaatactttcctagttgtgagaatggtcgcaagttccaccactttatttgtttctctgtctc 30874601  T
Q  210 tctctttccccttccaatctcatcctattccgttttctctgcagtactcaattgatccatttgtttttctattcgttttga 290  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30874600 tctcttttcccttccaatctcatcctattccgttttctctgcagtactcaattgatccatttgtttttctattcgttttga 30874520  T

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