View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_126 (Length: 286)

Name: NF10233A_low_126
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_126
NF10233A_low_126
[»] chr6 (3 HSPs)
chr6 (1-279)||(29307195-29307473)
chr6 (169-279)||(29302836-29302946)
chr6 (170-279)||(30485784-30485893)
[»] chr4 (7 HSPs)
chr4 (1-279)||(27726773-27727051)
chr4 (1-279)||(45969471-45969749)
chr4 (6-190)||(24151331-24151516)
chr4 (170-279)||(32998483-32998592)
chr4 (170-279)||(45965105-45965214)
chr4 (170-279)||(27731308-27731417)
chr4 (25-130)||(42320591-42320696)
[»] chr5 (5 HSPs)
chr5 (1-279)||(12525560-12525838)
chr5 (1-279)||(35845183-35845461)
chr5 (170-279)||(35840818-35840927)
chr5 (170-279)||(12530095-12530207)
chr5 (169-236)||(40902708-40902775)
[»] chr2 (4 HSPs)
chr2 (5-279)||(42304052-42304326)
chr2 (1-279)||(42909651-42909951)
chr2 (170-279)||(42299681-42299790)
chr2 (170-279)||(42914208-42914317)
[»] chr3 (1 HSPs)
chr3 (167-279)||(1747115-1747227)
[»] chr1 (4 HSPs)
chr1 (170-279)||(49221344-49221453)
chr1 (170-279)||(25484682-25484791)
chr1 (170-279)||(29283349-29283458)
chr1 (1-66)||(29279027-29279092)
[»] chr8 (3 HSPs)
chr8 (169-279)||(22757478-22757588)
chr8 (170-279)||(21609804-21609913)
chr8 (6-174)||(3370625-3370799)
[»] chr7 (2 HSPs)
chr7 (85-144)||(4129003-4129062)
chr7 (85-144)||(4126379-4126438)


Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 29307195 - 29307473
Alignment:
Q  1 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29307195 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccatt 29307294  T
Q  101 gaagattgagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaa 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29307295 gaagattaagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaa 29307394  T
Q  201 gagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacctagaataatct 279  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29307395 gagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacctagaataatct 29307473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 29302836 - 29302946
Alignment:
Q  169 atgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29302836 atgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacc 29302935  T
Q  269 tagaataatct 279  Q
    |||||||||||    
T  29302936 tagaataatct 29302946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 30485784 - 30485893
Alignment:
Q  170 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 269  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30485784 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 30485883  T
Q  270 agaataatct 279  Q
    ||||||||||    
T  30485884 agaataatct 30485893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 27727051 - 27726773
Alignment:
Q  1 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27727051 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccatt 27726952  T
Q  101 gaagattgagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27726951 gaagattgagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggagacaatgttagaaattaaatcaagaaatatctagaa 27726852  T
Q  201 gagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacctagaataatct 279  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27726851 gagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacctagaataatct 27726773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 45969471 - 45969749
Alignment:
Q  1 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45969471 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccatt 45969570  T
Q  101 gaagattgagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45969571 gaagattgagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaa 45969670  T
Q  201 gagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacctagaataatct 279  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  45969671 gagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccccctagaataatct 45969749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 24151331 - 24151516
Alignment:
Q  6 tttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaaga 105  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24151331 tttcacaagatacgagagttgattgctgaaaaagaagtggtgatcgagtattgtcccactgaagagcaaattgcggatatttttacaaagccattgaaga 24151430  T
Q  106 ttgagtcattttacaaattgaagaaaatgcttggaatgatg-aaagcttgatttaagggaggcaatgttagaaattaaatcaagaa 190  Q
    ||||  |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||    
T  24151431 ttgaagcattttacaaattgaagaaattgcttggaatgatgcaaagcttgatttaagggaggcgatgttagaagttaaatcaagaa 24151516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 32998592 - 32998483
Alignment:
Q  170 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 269  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32998592 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 32998493  T
Q  270 agaataatct 279  Q
    ||||||||||    
T  32998492 agaataatct 32998483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 45965105 - 45965214
Alignment:
Q  170 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 269  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45965105 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 45965204  T
Q  270 agaataatct 279  Q
    ||||||||||    
T  45965205 agaataatct 45965214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 27731417 - 27731308
Alignment:
Q  170 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 269  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27731417 tgttagaaattaaatcaagaaatatctagaagagtataaaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 27731318  T
Q  270 agaataatct 279  Q
    ||||||||||    
T  27731317 agaataatct 27731308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 42320696 - 42320591
Alignment:
Q  25 taattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattgagtcattttacaaatt 124  Q
    ||||||||||| |||||||||||||||||||| |||||| |||| | ||| |||  |||||||||| ||| || ||||||||||||| ||||||||| ||    
T  42320696 taattgctgaggaagaagtggtgatcgagtaccgtcccaatgaataacaagttgtggatatttttaaaaaacctttgaagattgagttattttacaattt 42320597  T
Q  125 gaagaa 130  Q
    ||||||    
T  42320596 gaagaa 42320591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 12525838 - 12525560
Alignment:
Q  1 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccatt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12525838 tccggtttcacaagatacgagagttaattgctgagaaataagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttgcaaagccatt 12525739  T
Q  101 gaagattgagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12525738 gaagattgagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaa 12525639  T
Q  201 gagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacctagaataatct 279  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  12525638 gagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccatctagaataatct 12525560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 35845183 - 35845461
Alignment:
Q  1 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35845183 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtattgtcccactgaagagcaaattgcagatatttttacaaagccatt 35845282  T
Q  101 gaagattgagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35845283 gaagattgagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaa 35845382  T
Q  201 gagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacctagaataatct 279  Q
    ||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35845383 gagtatagaagcttggagttattctttttcattaagagttaaaaatatctatattatgtagcaccacctagaataatct 35845461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 35840818 - 35840927
Alignment:
Q  170 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 269  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  35840818 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttattctttttcattaagagttaaaaatatctatattatgtagcaccacct 35840917  T
Q  270 agaataatct 279  Q
    ||||||||||    
T  35840918 agaataatct 35840927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 12530207 - 12530095
Alignment:
Q  170 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatct---atattatgtagcacca 266  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||    
T  12530207 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctataatattatgtagcacca 12530108  T
Q  267 cctagaataatct 279  Q
     ||||||||||||    
T  12530107 tctagaataatct 12530095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 40902708 - 40902775
Alignment:
Q  169 atgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaag 236  Q
    |||||||||||||||| ||||||||| |||||||||||||||| |||   ||||||||| | ||||||    
T  40902708 atgttagaaattaaataaagaaatatttagaagagtatagaagcttgacattactctttattattaag 40902775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 279
Target Start/End: Original strand, 42304052 - 42304326
Alignment:
Q  5 gtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaag 104  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  42304052 gtttcacaagatacgagagttaattgccgagaaagaagtggtgatcgagtattgtcccactgaagagaaaattgcagatatctttacaaagccattgaag 42304151  T
Q  105 attgagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagt 204  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42304152 attgagtcgttttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagt 42304251  T
Q  205 atagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacctagaataatct 279  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  42304252 atagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtaacaccacctagaataatct 42304326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 42909951 - 42909651
Alignment:
Q  1 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42909951 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactaaagagcaaattgcagatatttttacaaagccatt 42909852  T
Q  101 gaagattgagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgattt----------------------aagggaggcaatgttagaaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||||    
T  42909851 gaagattgagtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagaatgatgaaagcttgatttaagggaggcaatgttagaaa 42909752  T
Q  179 ttaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacctagaataatc 278  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42909751 ttaaatcaagaaatatctagaagagtatagaagcttagagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacctagaataatc 42909652  T
Q  279 t 279  Q
    |    
T  42909651 t 42909651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 42299681 - 42299790
Alignment:
Q  170 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 269  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  42299681 tgttagaaattaaatcaagaaatatctagaagagtatagaagtttggagttactctttatcattaagagttaaaaatatctatattatgtagcaccacct 42299780  T
Q  270 agaataatct 279  Q
    ||||||||||    
T  42299781 agaataatct 42299790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 42914317 - 42914208
Alignment:
Q  170 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 269  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42914317 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttagagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 42914218  T
Q  270 agaataatct 279  Q
    ||||||||||    
T  42914217 agaataatct 42914208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 1747227 - 1747115
Alignment:
Q  167 caatgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcacca 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1747227 caatgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcacca 1747128  T
Q  267 cctagaataatct 279  Q
    |||||||||||||    
T  1747127 cctagaataatct 1747115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 49221453 - 49221344
Alignment:
Q  170 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 269  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49221453 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 49221354  T
Q  270 agaataatct 279  Q
    ||||||||||    
T  49221353 agaataatct 49221344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 25484791 - 25484682
Alignment:
Q  170 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 269  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  25484791 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcacctcct 25484692  T
Q  270 agaataatct 279  Q
    ||||||||||    
T  25484691 agaataatct 25484682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 29283458 - 29283349
Alignment:
Q  170 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 269  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29283458 tgttagaaagtaaatcaagaaatatctagaagagtatagaagcttggagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 29283359  T
Q  270 agaataatct 279  Q
    ||||||||||    
T  29283358 agaataatct 29283349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29279092 - 29279027
Alignment:
Q  1 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29279092 tccggtttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactg 29279027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 169 - 279
Target Start/End: Complemental strand, 22757588 - 22757478
Alignment:
Q  169 atgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22757588 atgttagaaattaaatcaagaaatatctagaagagtatagaagcttgaagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacc 22757489  T
Q  269 tagaataatct 279  Q
    |||||||||||    
T  22757488 tagaataatct 22757478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 21609804 - 21609913
Alignment:
Q  170 tgttagaaattaaatcaagaaatatctagaagagtatagaaggttggagttactctttgtcattaagaattaaaaatatctatattatgtagcaccacct 269  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21609804 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttgaagttactctttgtcattaagagttaaaaatatctatattatgtagcaccacct 21609903  T
Q  270 agaataatct 279  Q
    ||||||||||    
T  21609904 agaataatct 21609913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 3370799 - 3370625
Alignment:
Q  6 tttcacaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaaga 105  Q
    |||||| |||| |||||  |||||| ||| ||| | | ||||||| | || |||||||||||||| |||||| |  ||||||||||||||||  | | ||    
T  3370799 tttcacgagattcgagaactaattgatgataaaaatggggtgatcaaatattgtcccactgaagaacaaattacttatatttttacaaagcctctaacga 3370700  T
Q  106 ttgagtcattttacaaattgaagaaaatgcttggaatga------tgaaagcttgatttaagggaggcaatgtta 174  Q
    | || | ||||||||| |||||||| |||||||||||||      || ||||||||||||||||||| |||||||    
T  3370699 tagaattattttacaagttgaagaagatgcttggaatgacaaatttggaagcttgatttaagggaggtaatgtta 3370625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 4129062 - 4129003
Alignment:
Q  85 tttttacaaagccattgaagattgagtcattttacaaattgaagaaaatgcttggaatga 144  Q
    ||||||||||||  ||||| ||||||| |||||||| || ||||||||||||||||||||    
T  4129062 tttttacaaagcagttgaaaattgagttattttacatatcgaagaaaatgcttggaatga 4129003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 4126438 - 4126379
Alignment:
Q  85 tttttacaaagccattgaagattgagtcattttacaaattgaagaaaatgcttggaatga 144  Q
    |||||||||||   ||||| ||||||| |||||||| || ||||||||||||||||||||    
T  4126438 tttttacaaagtagttgaaaattgagttattttacatatcgaagaaaatgcttggaatga 4126379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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