View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_127 (Length: 285)

Name: NF10233A_low_127
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_127
NF10233A_low_127
[»] chr3 (4 HSPs)
chr3 (1-239)||(5381378-5381616)
chr3 (1-239)||(13721145-13721383)
chr3 (77-156)||(24341603-24341682)
chr3 (237-268)||(5381242-5381273)
[»] scaffold0015 (2 HSPs)
scaffold0015 (1-239)||(27560-27798)
scaffold0015 (237-268)||(27424-27455)
[»] chr8 (2 HSPs)
chr8 (1-239)||(88291-88529)
chr8 (237-268)||(88634-88665)
[»] chr7 (4 HSPs)
chr7 (1-239)||(11713145-11713383)
chr7 (7-239)||(13162360-13162592)
chr7 (237-268)||(11713488-11713519)
chr7 (237-268)||(13162697-13162728)
[»] chr1 (4 HSPs)
chr1 (1-239)||(42377163-42377401)
chr1 (1-239)||(14474908-14475146)
chr1 (1-239)||(2795158-2795396)
chr1 (237-268)||(14474772-14474803)
[»] chr6 (2 HSPs)
chr6 (1-237)||(16775804-16776040)
chr6 (237-265)||(16775669-16775697)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5381616 - 5381378
Alignment:
Q  1 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5381616 gaaccagaaaaagaagaagttttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga 5381517  T
Q  101 tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5381516 tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagtggtagttg 5381417  T
Q  201 tgaaaatgtggtgtcgaactacatggtaaagaagttaga 239  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  5381416 tgaaaatgtggtgtcgaactacatggtagagaagttaga 5381378  T

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Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13721383 - 13721145
Alignment:
Q  1 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  13721383 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgttgatcatggcgagtctctggtgatcagacgaagcctacacgcga 13721284  T
Q  101 tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||||||    
T  13721283 tgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactactggaaaggtttgtgatgttataatagacagtggtagttg 13721184  T
Q  201 tgaaaatgtggtgtcgaactacatggtaaagaagttaga 239  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  13721183 tgaaaatgtggtgtcgaactacatggtagagaagttaga 13721145  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 24341682 - 24341603
Alignment:
Q  77 tgatcagacgaagcctacacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcacc 156  Q
    |||||| | |||| ||||||| ||||||||| |||||||||||||  ||||||||||| ||||| |||||||||||||||    
T  24341682 tgatcataggaaggctacacatgatgtcagcacaagaagagcattacttgaggaaaaacatttttcatactcgttgcacc 24341603  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 268
Target Start/End: Complemental strand, 5381273 - 5381242
Alignment:
Q  237 agaagtatcaagatcaagtttggtgtgatgtc 268  Q
    ||||||||||||||||||||||||||||||||    
T  5381273 agaagtatcaagatcaagtttggtgtgatgtc 5381242  T

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Target: scaffold0015 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 27798 - 27560
Alignment:
Q  1 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27798 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacgcga 27699  T
Q  101 tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  27698 tgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggtagttg 27599  T
Q  201 tgaaaatgtggtgtcgaactacatggtaaagaagttaga 239  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  27598 tgaaaatgtggtgtcgaactacatggtagagaagttaga 27560  T

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Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 268
Target Start/End: Complemental strand, 27455 - 27424
Alignment:
Q  237 agaagtatcaagatcaagtttggtgtgatgtc 268  Q
    ||||||||||||||||||||||||||||||||    
T  27455 agaagtatcaagatcaagtttggtgtgatgtc 27424  T

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Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 88291 - 88529
Alignment:
Q  1 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  88291 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacgcga 88390  T
Q  101 tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  88391 tgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggtagttg 88490  T
Q  201 tgaaaatgtggtgtcgaactacatggtaaagaagttaga 239  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  88491 tgaaaatgtggtgtcgaactacatggtagagaagttaga 88529  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 268
Target Start/End: Original strand, 88634 - 88665
Alignment:
Q  237 agaagtatcaagatcaagtttggtgtgatgtc 268  Q
    ||||||||||||||||||||||||||||||||    
T  88634 agaagtatcaagatcaagtttggtgtgatgtc 88665  T

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Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 11713145 - 11713383
Alignment:
Q  1 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11713145 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacgcga 11713244  T
Q  101 tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  11713245 tgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggtagttg 11713344  T
Q  201 tgaaaatgtggtgtcgaactacatggtaaagaagttaga 239  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  11713345 tgaaaatgtggtgtcgaactacatggtagagaagttaga 11713383  T

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Target: chr7; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 13162360 - 13162592
Alignment:
Q  7 gaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacgatgtcag 106  Q
    |||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  13162360 gaaaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgttcagacgaagcctacacgcgatgtcag 13162459  T
Q  107 ctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttgtgaaaa 206  Q
    | ||||||||||||||||||| |||||| ||  |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13162460 cccaagaagagcattggttgacgaaaaacatcatccatactcgttgcaccactgctggaaaagtttgtgatattataatagatagtggtagttgtgaaaa 13162559  T
Q  207 tgtggtgtcgaactacatggtaaagaagttaga 239  Q
    |||||||||||||||||||||| ||||||||||    
T  13162560 tgtggtgtcgaactacatggtagagaagttaga 13162592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 268
Target Start/End: Original strand, 11713488 - 11713519
Alignment:
Q  237 agaagtatcaagatcaagtttggtgtgatgtc 268  Q
    ||||||||||||||||||||||||||||||||    
T  11713488 agaagtatcaagatcaagtttggtgtgatgtc 11713519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 268
Target Start/End: Original strand, 13162697 - 13162728
Alignment:
Q  237 agaagtatcaagatcaagtttggtgtgatgtc 268  Q
    ||||||||||||||||||||||||||||||||    
T  13162697 agaagtatcaagatcaagtttggtgtgatgtc 13162728  T

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Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 42377163 - 42377401
Alignment:
Q  1 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  42377163 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctagtgatcagacgaagcctacacgcga 42377262  T
Q  101 tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg 200  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42377263 tgtcagctcaagaagagtattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagtggtagttg 42377362  T
Q  201 tgaaaatgtggtgtcgaactacatggtaaagaagttaga 239  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  42377363 tgaaaatgtggtgtcgaactacatggtagagaagttaga 42377401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14475146 - 14474908
Alignment:
Q  1 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14475146 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacgcga 14475047  T
Q  101 tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg 200  Q
    |||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  14475046 tgtcagctcaagaagagcattggttgagcaaaaacatttttcatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggtagttg 14474947  T
Q  201 tgaaaatgtggtgtcgaactacatggtaaagaagttaga 239  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  14474946 tgaaaatgtggtgtcgaactacatggtagagaatttaga 14474908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 2795396 - 2795158
Alignment:
Q  1 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  2795396 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctagtgatcagacgaagcctacacgcga 2795297  T
Q  101 tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg 200  Q
    |||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  2795296 tgtcagctcaagaagaacatttgttgaggaaaaacattttccatactcgttgcaccactgccggaaaagtttgtgatgttataatagacagtggtagttg 2795197  T
Q  201 tgaaaatgtggtgtcgaactacatggtaaagaagttaga 239  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  2795196 tgaaaatgtggtgtcgaactacatggtggagaagttaga 2795158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 268
Target Start/End: Complemental strand, 14474803 - 14474772
Alignment:
Q  237 agaagtatcaagatcaagtttggtgtgatgtc 268  Q
    ||||||||||||||||||||||||||||||||    
T  14474803 agaagtatcaagatcaagtttggtgtgatgtc 14474772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 16776040 - 16775804
Alignment:
Q  1 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  16776040 gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgaatctctagtgataagacgaagcctacacacga 16775941  T
Q  101 tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  16775940 tgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagtggtagttt 16775841  T
Q  201 tgaaaatgtggtgtcgaactacatggtaaagaagtta 237  Q
    |||||||||||||||||||||||||||| ||||||||    
T  16775840 tgaaaatgtggtgtcgaactacatggtagagaagtta 16775804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 16775697 - 16775669
Alignment:
Q  237 agaagtatcaagatcaagtttggtgtgat 265  Q
    |||||||||||||||||||||||||||||    
T  16775697 agaagtatcaagatcaagtttggtgtgat 16775669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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