View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_13 (Length: 445)
Name: NF10233A_low_13
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 91 - 294
Target Start/End: Complemental strand, 37704657 - 37704454
Alignment:
| Q |
91 |
tttcgtgttaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttg |
190 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704657 |
tttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttg |
37704558 |
T |
|
| Q |
191 |
ccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704557 |
ccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttt |
37704458 |
T |
|
| Q |
291 |
tggt |
294 |
Q |
| |
|
|||| |
|
|
| T |
37704457 |
tggt |
37704454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 99 - 293
Target Start/End: Complemental strand, 37699171 - 37698974
Alignment:
| Q |
99 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatg |
197 |
Q |
| |
|
||||||||||| |||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37699171 |
taattacgttcgaaaagtcttggttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatg |
37699072 |
T |
|
| Q |
198 |
tcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
293 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||| |||||||| |
|
|
| T |
37699071 |
tcatatcagtatacggttatgaaaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 99 - 294
Target Start/End: Complemental strand, 37437715 - 37437520
Alignment:
| Q |
99 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatg |
197 |
Q |
| |
|
||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |
|
|
| T |
37437715 |
taattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatattgttgccaattg |
37437616 |
T |
|
| Q |
198 |
tcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
294 |
Q |
| |
|
|||||||| |||| | |||||||||||| ||||| | |||| ||||||||| |||||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
37437615 |
tcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggt |
37437520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 37698697 - 37698636
Alignment:
| Q |
233 |
aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
294 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
37698697 |
aacaaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 37698808 - 37698703
Alignment:
| Q |
98 |
ttaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaat |
196 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||||||||||| |||||| | |||||||||||||||| | |
|
|
| T |
37698808 |
ttaattacgttaaaaaagtcttggtcttccaagatgttatttagtttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaatt |
37698717 |
T |
|
| Q |
197 |
gtcatatcagtata |
210 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
37698716 |
gtcatatcactata |
37698703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 16841041 - 16841109
Alignment:
| Q |
99 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
166 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||||||||| | |||||||||||||| |||| |
|
|
| T |
16841041 |
taattacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University