View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_130 (Length: 284)

Name: NF10233A_low_130
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_130
NF10233A_low_130
[»] chr6 (5 HSPs)
chr6 (105-278)||(33630940-33631114)
chr6 (1-78)||(4792842-4792919)
chr6 (1-78)||(29873623-29873700)
chr6 (1-78)||(2017931-2018008)
chr6 (1-63)||(22516903-22516965)
[»] chr7 (3 HSPs)
chr7 (1-78)||(30504214-30504291)
chr7 (1-78)||(24279026-24279103)
chr7 (1-78)||(42437430-42437507)
[»] chr3 (9 HSPs)
chr3 (1-78)||(55094048-55094125)
chr3 (1-79)||(5635908-5635986)
chr3 (1-78)||(2182202-2182279)
chr3 (1-78)||(51225501-51225578)
chr3 (1-75)||(32771512-32771586)
chr3 (1-78)||(17257143-17257220)
chr3 (14-78)||(50380643-50380707)
chr3 (4-78)||(35494604-35494678)
chr3 (16-78)||(36316755-36316817)
[»] chr2 (7 HSPs)
chr2 (1-78)||(11364404-11364481)
chr2 (2-78)||(23048845-23048921)
chr2 (1-78)||(8667035-8667112)
chr2 (1-73)||(43890687-43890759)
chr2 (1-78)||(44077953-44078030)
chr2 (1-60)||(21632369-21632428)
chr2 (1-38)||(28720272-28720309)
[»] chr4 (8 HSPs)
chr4 (4-78)||(51543489-51543563)
chr4 (1-73)||(53060935-53061007)
chr4 (1-78)||(6033338-6033415)
chr4 (1-78)||(8143839-8143916)
chr4 (1-78)||(33167527-33167604)
chr4 (1-75)||(29775872-29775946)
chr4 (1-78)||(38829068-38829147)
chr4 (1-63)||(1139660-1139722)
[»] scaffold0854 (1 HSPs)
scaffold0854 (1-78)||(2798-2875)
[»] chr1 (7 HSPs)
chr1 (1-78)||(4475663-4475740)
chr1 (1-78)||(50503984-50504061)
chr1 (1-75)||(21259462-21259536)
chr1 (1-75)||(50877294-50877368)
chr1 (1-78)||(49695938-49696015)
chr1 (1-78)||(51548931-51549008)
chr1 (45-78)||(39277540-39277573)
[»] chr8 (5 HSPs)
chr8 (1-78)||(8348512-8348589)
chr8 (1-78)||(45309079-45309156)
chr8 (1-78)||(12279750-12279827)
chr8 (1-73)||(42074716-42074788)
chr8 (1-78)||(8951897-8951977)
[»] chr5 (4 HSPs)
chr5 (1-74)||(4887968-4888041)
chr5 (1-78)||(38163135-38163212)
chr5 (1-78)||(38973971-38974048)
chr5 (1-73)||(26365492-26365564)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-62)||(200906-200967)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 105 - 278
Target Start/End: Original strand, 33630940 - 33631114
Alignment:
Q  105 tcaaagagattagtct-ctacaaatgaacatagagaccacttgttttacacccaaataataagtacacaattttaaaatatacactatattatactgtca 203  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33630940 tcaaagagattagtctgctacaaatgaacatagagaccacttgttttactcccaaataataagtacacaattttaaaatatacactataatatactgtca 33631039  T
Q  204 accataagtataactcaggcataacctatagatcgctctaaagtttcccaaaataaaaccttgttttgtgatatc 278  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33631040 accataagtataactcaggcataacctatagatcactctaaagtttcccaaaataaaaccttgttttgtgatatc 33631114  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4792919 - 4792842
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||| |||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  4792919 atcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt 4792842  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29873700 - 29873623
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||| ||||    
T  29873700 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgtt 29873623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 2017931 - 2018008
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||||||| ||||||||| ||||    
T  2017931 atcagaacaatcacatactgtctacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgtt 2018008  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22516903 - 22516965
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttc 63  Q
    ||||||||||||||||| |||||||||| |||||||||||||  || ||||||||||||||||    
T  22516903 atcagaacaatcacatattgtttacattattaaaagtataatgatattttctatttatatttc 22516965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 30504291 - 30504214
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  30504291 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt 30504214  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 24279026 - 24279103
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||||||||||||| |||||||||||||  |||||| |||||||||||| ||||||||||||||    
T  24279026 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttatatttatatttcctcatcaactctgtt 24279103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 42437430 - 42437507
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||| |||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||| ||||    
T  42437430 atcagaacaatgacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactatgtt 42437507  T

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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 55094048 - 55094125
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  55094048 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt 55094125  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 5635986 - 5635908
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgttt 79  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| | |||||||||||||||    
T  5635986 atcagaacaatcacatattgtttacattattaaaagtataatggtagtttctatttatattccatcatcaactctgttt 5635908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 2182202 - 2182279
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||||| ||||||||||| ||||||||||||||    
T  2182202 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttcaatttatatttcctcatcaactctgtt 2182279  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 51225578 - 51225501
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  51225578 atcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt 51225501  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 32771512 - 32771586
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactct 75  Q
    ||||||||||||||||| |||||||||| |||||||||||||  ||||||||||||||||||| |||||||||||    
T  32771512 atcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactct 32771586  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 17257220 - 17257143
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||| ||| |||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  17257220 atcagaacaatcaaataatgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt 17257143  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 50380707 - 50380643
Alignment:
Q  14 catactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  50380707 catactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt 50380643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 35494604 - 35494678
Alignment:
Q  4 agaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||| |||||||| |||||||||||||  ||||||| ||||||||||| |||||| |||||||    
T  35494604 agaacaatcacatactatttacattattaaaagtataatgatagtttcaatttatatttcctcatcatctctgtt 35494678  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 36316755 - 36316817
Alignment:
Q  16 tactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||| |||||||||||||  || ||| |||||||||||| ||||||||||||||    
T  36316755 tactgtttacattattaaaagtataatgatactttatatttatatttcctcatcaactctgtt 36316817  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 11364481 - 11364404
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  11364481 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt 11364404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 23048921 - 23048845
Alignment:
Q  2 tcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  23048921 tcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt 23048845  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 8667035 - 8667112
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||| ||||||||||||||||||||||| |||||||||||||  ||||||| ||||||||||| ||||||||||||||    
T  8667035 atcataacaatcacatactgtttacattattaaaagtataatgatagtttcaatttatatttcctcatcaactctgtt 8667112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 43890759 - 43890687
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaact 73  Q
    ||||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||| |||||||||    
T  43890759 atcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttatatttcctcatcaact 43890687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 44077953 - 44078030
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||| |||||||||| | |||||||||||  ||||||||||||||||||  ||||||||| ||||    
T  44077953 atcagaacaatcacatattgtttacattatcaaaagtataatgatagtttctatttatattttctcatcaactatgtt 44078030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21632428 - 21632369
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatat 60  Q
    |||| ||||||||||||||||||||||| |||||||||||||  || |||||||||||||    
T  21632428 atcaaaacaatcacatactgtttacattattaaaagtataatgatattttctatttatat 21632369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28720272 - 28720309
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagta 38  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  28720272 atcagaacaatcacatactttttacattattaaaagta 28720309  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 51543563 - 51543489
Alignment:
Q  4 agaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  51543563 agaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt 51543489  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 53061007 - 53060935
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaact 73  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| |||||||||    
T  53061007 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaact 53060935  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 6033338 - 6033415
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||| ||||||||| ||||    
T  6033338 atcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgtt 6033415  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 8143839 - 8143916
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||| |||||||||| |||||||||||||  ||||||||||||||||||| | ||||||||||||    
T  8143839 atcagaacaatcacataatgtttacattattaaaagtataatgatagtttctatttatatttcctgatcaactctgtt 8143916  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33167527 - 33167604
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||| ||||||||| ||||    
T  33167527 atcagaacaatcacatactatttacattattaaaagtataataatagtttctatttatatttcctcatcaactgtgtt 33167604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29775946 - 29775872
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactct 75  Q
    ||||||||||||||||||||||| |||| |||||||||||||  |||||| |||||||||||| |||||||||||    
T  29775946 atcagaacaatcacatactgtttgcattattaaaagtataatgatagtttatatttatatttcctcatcaactct 29775872  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 38829147 - 38829068
Alignment:
Q  1 atcagaacaatcacatac--tgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||   |||||||||| |||||||||||||  ||||||||||||||||||| ||||||||| ||||    
T  38829147 atcagaacaatcacatatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgtt 38829068  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1139722 - 1139660
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttc 63  Q
    |||||| |||||||||| |||||||||| |||||||||||||  |||||||||||||||||||    
T  1139722 atcagaccaatcacataatgtttacattattaaaagtataatgatagtttctatttatatttc 1139660  T

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Target: scaffold0854 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 2798 - 2875
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||| |||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  2798 atcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt 2875  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4475663 - 4475740
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||| |||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  4475663 atcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt 4475740  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 50504061 - 50503984
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||  ||||||||||||||    
T  50504061 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatattttctcatcaactctgtt 50503984  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21259462 - 21259536
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactct 75  Q
    |||||||||||||||||||||||||||| |||||||||||||  |||||||| |||||||||| |||||||||||    
T  21259462 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctttttatatttcctcatcaactct 21259536  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 50877294 - 50877368
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactct 75  Q
    |||||||||||||||||||||||||||  |||||||||||||  ||||||||||||||||||| |||||||||||    
T  50877294 atcagaacaatcacatactgtttacatcattaaaagtataatgatagtttctatttatatttcctcatcaactct 50877368  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 49696015 - 49695938
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||  ||||||||||||||    
T  49696015 atcagaacaatcacatactgtttacattattaaaagtataatgacagtttctatttatattttctcatcaactctgtt 49695938  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 51549008 - 51548931
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||| |||| |||||||||| |||||||||||||  ||||||||||||||||||| ||||||||| ||||    
T  51549008 atcagaacaatcgcatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgtt 51548931  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 39277573 - 39277540
Alignment:
Q  45 tagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||||| ||||||||||||||    
T  39277573 tagtttctatttatatttcctcatcaactctgtt 39277540  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 8348512 - 8348589
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||||||||||||  |||||||||||||  ||||||||||||||||||| ||||||| ||||||    
T  8348512 atcagaacaatcacatactgtttacataattaaaagtataatgatagtttctatttatatttcctcatcaattctgtt 8348589  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 45309079 - 45309156
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||||||||| ||||||||| ||||    
T  45309079 atcagaacaatcacatactgtttacattattaaaagcataatgatagtttctatttatatttcctcatcaactatgtt 45309156  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12279750 - 12279827
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||||| |||||||| |||||||||||||  ||||||||||||| ||||| ||||||||| ||||    
T  12279750 atcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttacatttcctcatcaactttgtt 12279827  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 42074716 - 42074788
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaact 73  Q
    ||||||||||||  |||||||||||||| |||||||||||||  ||||||||||||||||||| |||||||||    
T  42074716 atcagaacaatcgtatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaact 42074788  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8951977 - 8951897
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgt---agtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||||||||||||| |||||||||||||  |   |||||||||||||||||| ||||||||| ||||    
T  8951977 atcagaacaatcacatactgtttacattattaaaagtataattatgatagtttctatttatatttcctcatcaactatgtt 8951897  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4888041 - 4887968
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactc 74  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| || |||||||    
T  4888041 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcgtcaactc 4887968  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 38163135 - 38163212
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    ||||||||||||||||| |||||||||| |||||||||||||   |||||||||||||||||| ||||||||||||||    
T  38163135 atcagaacaatcacatattgtttacattattaaaagtataatgacagtttctatttatatttcctcatcaactctgtt 38163212  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 38974048 - 38973971
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaactctgtt 78  Q
    |||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||| ||||||||| ||||    
T  38974048 atcagaacaatcacatactgtttacattattaaaagtataaggatagtttctatttatatttcctcatcaactttgtt 38973971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26365492 - 26365564
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatatttcttcatcaact 73  Q
    ||||||||||||||||||||||| |||| |||||||||||||  ||||||||||||||||||| |||||||||    
T  26365492 atcagaacaatcacatactgttttcattattaaaagtataatgatagtttctatttatatttcctcatcaact 26365564  T

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Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 200906 - 200967
Alignment:
Q  1 atcagaacaatcacatactgtttacattgttaaaagtataatcgtagtttctatttatattt 62  Q
    ||||||||||||||||||| |||||||| ||||||||||| |  |||||||||||| |||||    
T  200906 atcagaacaatcacatactatttacattattaaaagtatagtgatagtttctatttctattt 200967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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