View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_132 (Length: 282)

Name: NF10233A_low_132
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_132
NF10233A_low_132
[»] chr4 (13 HSPs)
chr4 (1-282)||(42533580-42533854)
chr4 (148-279)||(44432663-44432794)
chr4 (143-276)||(5274276-5274409)
chr4 (148-279)||(22047140-22047271)
chr4 (148-279)||(4839774-4839905)
chr4 (143-279)||(46692776-46692911)
chr4 (143-279)||(55326162-55326298)
chr4 (148-279)||(8894230-8894360)
chr4 (142-268)||(6639355-6639481)
chr4 (143-272)||(19248428-19248556)
chr4 (143-270)||(26069069-26069195)
chr4 (148-260)||(35417446-35417557)
chr4 (148-260)||(40996292-40996404)
[»] chr5 (13 HSPs)
chr5 (143-279)||(24835147-24835283)
chr5 (143-279)||(11723913-11724049)
chr5 (143-279)||(30607818-30607954)
chr5 (148-279)||(14343885-14344016)
chr5 (148-279)||(33434000-33434131)
chr5 (148-277)||(7314378-7314507)
chr5 (148-279)||(9403713-9403844)
chr5 (148-279)||(34455587-34455718)
chr5 (143-278)||(11766144-11766279)
chr5 (148-279)||(6269309-6269441)
chr5 (153-265)||(30422188-30422299)
chr5 (148-272)||(34870314-34870437)
chr5 (182-236)||(42748256-42748310)
[»] chr2 (11 HSPs)
chr2 (143-279)||(29223102-29223238)
chr2 (143-279)||(29336401-29336537)
chr2 (148-279)||(8684077-8684209)
chr2 (143-279)||(32522383-32522510)
chr2 (148-272)||(36668484-36668607)
chr2 (143-209)||(29226728-29226794)
chr2 (143-209)||(29340027-29340093)
chr2 (150-209)||(29792577-29792636)
chr2 (143-227)||(31757713-31757798)
chr2 (143-227)||(27256908-27256992)
chr2 (148-227)||(40199502-40199582)
[»] chr3 (13 HSPs)
chr3 (148-277)||(10407589-10407718)
chr3 (143-279)||(3587788-3587924)
chr3 (148-279)||(27031424-27031555)
chr3 (142-279)||(4755495-4755632)
chr3 (148-275)||(52045524-52045651)
chr3 (148-279)||(52308630-52308761)
chr3 (138-279)||(7653858-7653998)
chr3 (143-279)||(8614913-8615048)
chr3 (134-282)||(36470063-36470211)
chr3 (148-253)||(11263597-11263703)
chr3 (148-271)||(33247302-33247424)
chr3 (144-224)||(36981132-36981212)
chr3 (144-224)||(37006571-37006651)
[»] chr1 (9 HSPs)
chr1 (142-279)||(38122674-38122811)
chr1 (148-275)||(16833391-16833518)
chr1 (148-279)||(12168813-12168944)
chr1 (148-279)||(33492833-33492963)
chr1 (151-279)||(13218672-13218800)
chr1 (148-261)||(39453350-39453462)
chr1 (148-266)||(25242410-25242528)
chr1 (148-276)||(13829598-13829725)
chr1 (148-260)||(16129004-16129115)
[»] scaffold0015 (2 HSPs)
scaffold0015 (143-278)||(174033-174168)
scaffold0015 (143-278)||(185191-185326)
[»] chr8 (15 HSPs)
chr8 (148-275)||(27347440-27347567)
chr8 (148-278)||(3298195-3298325)
chr8 (143-279)||(27353515-27353651)
chr8 (143-279)||(28926781-28926917)
chr8 (148-276)||(22179903-22180031)
chr8 (142-279)||(8744005-8744142)
chr8 (148-279)||(9068804-9068935)
chr8 (143-279)||(36737498-36737633)
chr8 (148-279)||(1606596-1606726)
chr8 (148-219)||(16957901-16957972)
chr8 (143-201)||(28369584-28369642)
chr8 (143-227)||(4435537-4435621)
chr8 (148-227)||(21687382-21687462)
chr8 (148-227)||(21691706-21691786)
chr8 (148-260)||(24040006-24040117)
[»] chr7 (18 HSPs)
chr7 (148-279)||(22817832-22817963)
chr7 (141-279)||(7143044-7143182)
chr7 (148-278)||(31158914-31159044)
chr7 (142-279)||(23794481-23794618)
chr7 (148-279)||(10346943-10347074)
chr7 (143-279)||(2630809-2630944)
chr7 (148-279)||(12183259-12183390)
chr7 (148-279)||(22322521-22322652)
chr7 (143-279)||(19472897-19473033)
chr7 (148-279)||(45501268-45501400)
chr7 (148-277)||(2477074-2477203)
chr7 (143-275)||(2798182-2798314)
chr7 (148-279)||(31878015-31878146)
chr7 (148-228)||(31001376-31001456)
chr7 (157-229)||(8139848-8139920)
chr7 (143-278)||(20403074-20403208)
chr7 (151-278)||(29863923-29864049)
chr7 (143-236)||(24169396-24169489)
[»] chr6 (10 HSPs)
chr6 (148-279)||(26511138-26511269)
chr6 (148-279)||(26516254-26516385)
chr6 (148-278)||(3538441-3538571)
chr6 (143-275)||(34005893-34006025)
chr6 (148-275)||(9934626-9934753)
chr6 (143-275)||(24161866-24161997)
chr6 (151-276)||(26603622-26603746)
chr6 (148-261)||(31131280-31131392)
chr6 (191-273)||(15641761-15641842)
chr6 (148-261)||(2298290-2298402)
[»] scaffold0002 (1 HSPs)
scaffold0002 (148-279)||(354377-354508)
[»] scaffold1494 (1 HSPs)
scaffold1494 (143-279)||(954-1089)
[»] scaffold0019 (1 HSPs)
scaffold0019 (143-279)||(117268-117404)
[»] scaffold0014 (1 HSPs)
scaffold0014 (148-234)||(79922-80008)
[»] scaffold0059 (1 HSPs)
scaffold0059 (148-279)||(17110-17241)
[»] scaffold0744 (1 HSPs)
scaffold0744 (148-272)||(1851-1974)
[»] scaffold0458 (1 HSPs)
scaffold0458 (148-276)||(10197-10324)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 42533854 - 42533580
Alignment:
Q  1 tcaatagtttgaggcgactagctcaccttgccaggtccggaccaaatcaacggcaaatggaatatgctaagaaatatgacaacacacgaattcacatctt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  42533854 tcaatagtttgaggcgactagctcaccttaccaggtccggaccaaatcaacggcaaatggaatatgctaagaaat-------cacacgaattcacatctt 42533762  T
Q  101 ccgcaatggttttcaacagcaacacaaattcttgcttgatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgactt 200  Q
    || ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42533761 cctcaatggttttcaacagcaacacagattcttgcttgatgcttgataagtgctcaaaagtaacatatttcatgtgctaacttaggcaaattagtgactt 42533662  T
Q  201 gttttgcaagttatctaagggaaagctaccatttgagtgtatttttgccatttatgctttacatgcctgattctacccattt 282  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  42533661 gttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctatccattt 42533580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 44432794 - 44432663
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  44432794 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 44432695  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    |||||||||||||||||| |||||||||||||    
T  44432694 ccatttatgctttacatgtctgattctaccca 44432663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 143 - 276
Target Start/End: Complemental strand, 5274409 - 5274276
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  5274409 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaa 5274310  T
Q  243 ttttgccatttatgctttacatgcctgattctac 276  Q
    | || |||||||||||||||||||||||||||||    
T  5274309 tattaccatttatgctttacatgcctgattctac 5274276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 22047140 - 22047271
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| | ||||     
T  22047140 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 22047239  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  22047240 ccatttatgctttacatgcctgattctaccca 22047271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 4839905 - 4839774
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||| | ||||     
T  4839905 aagtgctcaaaagtaacatatttcatgtgttaacttaggcgaattagtgatttgttttgcaagttatctgaggaaaagctaccatttgagtgcaatttta 4839806  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  4839805 ccatttatgctttacatgcctgattctaccca 4839774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 46692911 - 46692776
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||| |||| |||||||||||| |||  ||||||  |||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  46692911 ttgataagtgctcaaa-gtaatatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtat 46692813  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    || | ||||||||||||||||||||||||||||||||    
T  46692812 ttataccatttatgctttacatgcctgattctaccca 46692776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 55326162 - 55326298
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||||||||  |||  |||| |  ||||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  55326162 ttgataagtgctcaaaagtaacatattttatgtattaatctaggaagtttagtgacttgttctgcaagttatctaaggaaaaactaccatttgagtgtat 55326261  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    || | ||||||| ||||||||||||||||||||||||    
T  55326262 ttgtaccatttacgctttacatgcctgattctaccca 55326298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 8894230 - 8894360
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    |||||||||||| | | |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||| |||||| |||| || ||    
T  8894230 aagtgctcaaaactgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggtaaagctacaatttga-tgtaattatg 8894328  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||  ||||| ||| ||||||    
T  8894329 ccatttatgctttatgtgccttattgtaccca 8894360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 142 - 268
Target Start/End: Original strand, 6639355 - 6639481
Alignment:
Q  142 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgta 241  Q
    ||||| |||||||||| ||||| |||||| ||||| ||| |||||||  || ||||||||||||||||||||||||||| ||||||||||  |   ||||    
T  6639355 cttgataagtgctcaagagtaatatatttcatgtgttaatttaggcattttggtgacttgttttgcaagttatctaaggaaaagctaccaacttgttgta 6639454  T
Q  242 tttttgccatttatgctttacatgcct 268  Q
     |||| |||||||||||||||||||||    
T  6639455 attttaccatttatgctttacatgcct 6639481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 19248556 - 19248428
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||| |||| |||||||||| |||  ||||||  |||||| ||||||||||||||||||||||| ||| ||| || |||  || ||    
T  19248556 ttgataagtgctcaaaagcaacacattttatgtgttaatctaggcactttagtggcttgttttgcaagttatctaaggaaaatctatcaattg-ttgcat 19248458  T
Q  243 ttttgccatttatgctttacatgcctgatt 272  Q
    |||| |||||||||||||||||||||||||    
T  19248457 ttttaccatttatgctttacatgcctgatt 19248428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 270
Target Start/End: Original strand, 26069069 - 26069195
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctacc-atttgagtgta 241  Q
    |||| ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| |||||||||||||||  ||||||||| | ||  ||||     
T  26069069 ttgataagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaagaaaaagctacctaatt--gtgtt 26069166  T
Q  242 tttttgccatttatgctttacatgcctga 270  Q
     |||| |||||||||||||||||||||||    
T  26069167 attttaccatttatgctttacatgcctga 26069195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 260
Target Start/End: Complemental strand, 35417557 - 35417446
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    |||||||||||||||  || ||| ||||| ||| | |||||  ||||||||||||||||||| |||||||||| ||||| | ||||||  |||| |||      
T  35417557 aagtgctcaaaagtactatctttcatgtgttaaataaggcattttagtgacttgttttgcaaattatctaaggaaaagcaatcatttg-ttgtaatttga 35417459  T
Q  248 ccatttatgcttt 260  Q
    |||||||||||||    
T  35417458 ccatttatgcttt 35417446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 260
Target Start/End: Complemental strand, 40996404 - 40996292
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttg-caagttatctaagggaaagctaccatttgagtgtattttt 246  Q
    |||||||||||||||  || ||| ||||| |||  |||| |  |||||||||||||||| |||||||||||||| ||||| | ||||| | |||| |||     
T  40996404 aagtgctcaaaagtattatctttcatgtgttaaaataggtattttagtgacttgttttgtcaagttatctaaggaaaagcaatcattt-attgtaatttg 40996306  T
Q  247 gccatttatgcttt 260  Q
     |||||||||||||    
T  40996305 accatttatgcttt 40996292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 24835147 - 24835283
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24835147 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 24835246  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    |||| ||||||||||||||||||||||||||||||||    
T  24835247 ttttaccatttatgctttacatgcctgattctaccca 24835283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 11724049 - 11723913
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |     
T  11724049 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 11723950  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    |||| ||||||||||||||||||||||||||||||||    
T  11723949 ttttaccatttatgctttacatgcctgattctaccca 11723913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 30607954 - 30607818
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  30607954 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaa 30607855  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    | || ||||||||||||||||||||||||||||||||    
T  30607854 tattaccatttatgctttacatgcctgattctaccca 30607818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 14343885 - 14344016
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||     
T  14343885 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 14343984  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  14343985 ccatttatgctttacatgcctgattctaccca 14344016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 33434000 - 33434131
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||     
T  33434000 aagtgcttaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgtattttta 33434099  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  33434100 ccatttatgctttacatgcctgattctaccca 33434131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 7314378 - 7314507
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||     
T  7314378 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 7314477  T
Q  248 ccatttatgctttacatgcctgattctacc 277  Q
    ||||||||||||||||||||||||||||||    
T  7314478 ccatttatgctttacatgcctgattctacc 7314507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 9403713 - 9403844
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||     
T  9403713 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 9403812  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    | ||||||||||||||||||||||||||||||    
T  9403813 ctatttatgctttacatgcctgattctaccca 9403844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 34455587 - 34455718
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||     
T  34455587 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 34455686  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    |||||||||||||||||||| |||||||||||    
T  34455687 ccatttatgctttacatgcccgattctaccca 34455718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 11766144 - 11766279
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |     
T  11766144 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 11766243  T
Q  243 ttttgccatttatgctttacatgcctgattctaccc 278  Q
    |||| |||||||||||||||||| ||||||||||||    
T  11766244 ttttaccatttatgctttacatgtctgattctaccc 11766279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 6269309 - 6269441
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgta-ttttt 246  Q
    ||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||    
T  6269309 aagtgctcaaaagtaacatatttcatgtgttaacctaggcaatttagtgacttgttttgcaagttatctaaggaaaatctaccatttgagtgtatttttt 6269408  T
Q  247 gccatttatgctttacatgcctgattctaccca 279  Q
     |||||||||||||||||| |||||||||||||    
T  6269409 accatttatgctttacatgtctgattctaccca 6269441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 30422188 - 30422299
Alignment:
Q  153 ctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttgccatt 252  Q
    ||||||||||| |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||| ||| ||||||||| |  ||| ||||||||||    
T  30422188 ctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaaactaccattt-atcgtaattttgccatt 30422286  T
Q  253 tatgctttacatg 265  Q
    |||||||||||||    
T  30422287 tatgctttacatg 30422299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 272
Target Start/End: Complemental strand, 34870437 - 34870314
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||||||||| |||  ||||||  |||||| ||||||||||||||||||||||| ||| ||| || |||  || ||||||     
T  34870437 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaaactatcaattg-ttgcattttta 34870339  T
Q  248 ccatttatgctttacatgcctgatt 272  Q
    |||||||||||||||||| ||||||    
T  34870338 ccatttatgctttacatgtctgatt 34870314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 42748310 - 42748256
Alignment:
Q  182 ttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttga 236  Q
    |||||||  ||||| |||||||||||||||||| ||||| |||||||| ||||||    
T  42748310 ttaggcactttagttacttgttttgcaagttatttaaggaaaagctacaatttga 42748256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 29223102 - 29223238
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29223102 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 29223201  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    |||| ||||||||||||||||||||||||||||||||    
T  29223202 ttttaccatttatgctttacatgcctgattctaccca 29223238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 29336401 - 29336537
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29336401 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 29336500  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    |||| ||||||||||||||||||||||||||||||||    
T  29336501 ttttaccatttatgctttacatgcctgattctaccca 29336537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 8684209 - 8684077
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat-tttt 246  Q
    |||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||    
T  8684209 aagtgctcaaaagtaaaatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccgtttgagtgtatttttt 8684110  T
Q  247 gccatttatgctttacatgcctgattctaccca 279  Q
     ||||||||||||||||| ||||||||||||||    
T  8684109 accatttatgctttacatacctgattctaccca 8684077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 32522383 - 32522510
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  32522383 ttgataagtgctcaaaagtaacatattttatgtgttaatttag---------tgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtat 32522473  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    || | ||||||||||||||||||||||||||||||||    
T  32522474 ttataccatttatgctttacatgcctgattctaccca 32522510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 272
Target Start/End: Complemental strand, 36668607 - 36668484
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||| ||||||||||||||| |||  ||||||  |||||| ||||||||||||||||||||||| ||||||| || |||  || ||||||     
T  36668607 aagtgctcaaaagcaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaagctatcaattg-ttgcattttta 36668509  T
Q  248 ccatttatgctttacatgcctgatt 272  Q
    |||||||||||||||||||||||||    
T  36668508 ccatttatgctttacatgcctgatt 36668484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 29226728 - 29226794
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 209  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29226728 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29226794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 29340027 - 29340093
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 209  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29340027 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29340093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 29792577 - 29792636
Alignment:
Q  150 gtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 209  Q
    ||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| |||||    
T  29792577 gtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaa 29792636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 31757713 - 31757798
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaagggaaagct 227  Q
    |||| |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| || ||||||    
T  31757713 ttgataagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 31757798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 27256908 - 27256992
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagct 227  Q
    |||| |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| || ||||||    
T  27256908 ttgataagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaagct 27256992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 40199502 - 40199582
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaagggaaagct 227  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||| ||||||||||||| ||||||| || ||||||    
T  40199502 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgccttgttttgcaagattatctatggcaaagct 40199582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 10407718 - 10407589
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||     
T  10407718 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 10407619  T
Q  248 ccatttatgctttacatgcctgattctacc 277  Q
    ||||||||||||||||||||||||||||||    
T  10407618 ccatttatgctttacatgcctgattctacc 10407589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 3587788 - 3587924
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |     
T  3587788 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 3587887  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    |||| ||||||||||||||||||||||||||||||||    
T  3587888 ttttaccatttatgctttacatgcctgattctaccca 3587924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 27031555 - 27031424
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||     
T  27031555 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 27031456  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  27031455 ccatttatgctttacatgcctgattctaccca 27031424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 4755632 - 4755495
Alignment:
Q  142 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgta 241  Q
    ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  4755632 cttgataagtgctcaaaagtaacatatttcatgtgttaaattaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgta 4755533  T
Q  242 tttttgccatttatgctttacatgcctgattctaccca 279  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  4755532 tttttaccatttatgccttacatgcctgattctaccca 4755495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 52045651 - 52045524
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||     
T  52045651 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaatttgtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 52045552  T
Q  248 ccatttatgctttacatgcctgattcta 275  Q
    ||||||||||||||||||||||||||||    
T  52045551 ccatttatgctttacatgcctgattcta 52045524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 52308761 - 52308630
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||     
T  52308761 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgctttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 52308662  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    |||||||||||||||||| |||||||||||||    
T  52308661 ccatttatgctttacatgtctgattctaccca 52308630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 138 - 279
Target Start/End: Complemental strand, 7653998 - 7653858
Alignment:
Q  138 gatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgag 237  Q
    |||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7653998 gatgattgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgag 7653899  T
Q  238 tgtatttttgccatttatgctttacatgcctgattctaccca 279  Q
    || | |||| ||||||||||||| ||||||||||||||||||    
T  7653898 tgcaattttaccatttatgcttt-catgcctgattctaccca 7653858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 8614913 - 8615048
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |     
T  8614913 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaa 8615011  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    |||| ||||||||||||||||||||||||||||||||    
T  8615012 ttttaccatttatgctttacatgcctgattctaccca 8615048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 134 - 282
Target Start/End: Complemental strand, 36470211 - 36470063
Alignment:
Q  134 gcttgatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatt 233  Q
    |||||||| |||| ||||||||||||||| ||||||| ||||| |||  ||||||| ||||||| ||||||||||||||||| |||| ||||||||||||    
T  36470211 gcttgatgtttgataagtgctcaaaagtaccatatttaatgtgttaatctaggcaatttagtgatttgttttgcaagttatccaaggaaaagctaccatt 36470112  T
Q  234 tgagtgtatttttgccatttatgctttacatgcctgattctacccattt 282  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| ||||    
T  36470111 tgagtgtatttataccaattatgctttacatgcctgattctaccaattt 36470063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 253
Target Start/End: Complemental strand, 11263703 - 11263597
Alignment:
Q  148 aagtgctcaaaa-gtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtattttt 246  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  11263703 aagtgctcaaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggtaacgctagcatttgagtgtattttt 11263604  T
Q  247 gccattt 253  Q
     ||||||    
T  11263603 accattt 11263597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 271
Target Start/End: Original strand, 33247302 - 33247424
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| |||||||||||||||| |||||||| |  |  ||||  ||||     
T  33247302 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaaggaaaagctactaaat-tgtgttctttta 33247400  T
Q  248 ccatttatgctttacatgcctgat 271  Q
    ||||||||||||||||||||||||    
T  33247401 ccatttatgctttacatgcctgat 33247424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 36981132 - 36981212
Alignment:
Q  144 tgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaa 224  Q
    |||| ||||||||||||| | ||||||| |||| ||| ||| |||  ||||||| ||||||||||| |||  |||||||||    
T  36981132 tgaatagtgctcaaaagtgatatattttttgtgttaatttaagcattttagtgatttgttttgcaaattacttaagggaaa 36981212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 37006571 - 37006651
Alignment:
Q  144 tgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaa 224  Q
    |||| ||||||||||||| | ||||||| |||| ||| ||| |||  ||||||| ||||||||||| |||  |||||||||    
T  37006571 tgaatagtgctcaaaagtgatatattttttgtgttaatttaagcattttagtgatttgttttgcaaattacttaagggaaa 37006651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 38122811 - 38122674
Alignment:
Q  142 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgta 241  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38122811 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 38122712  T
Q  242 tttttgccatttatgctttacatgcctgattctaccca 279  Q
     | || ||||||||||||||||||||||||||||||||    
T  38122711 atattaccatttatgctttacatgcctgattctaccca 38122674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 16833518 - 16833391
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||     
T  16833518 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgattgtattttta 16833419  T
Q  248 ccatttatgctttacatgcctgattcta 275  Q
    ||||||||||||||||||||||||||||    
T  16833418 ccatttatgctttacatgcctgattcta 16833391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 12168944 - 12168813
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| | ||||     
T  12168944 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 12168845  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  12168844 ccatttatgctttacatgcctgattctaccca 12168813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 33492963 - 33492833
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||     
T  33492963 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 33492864  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||| ||||||||||||||||||    
T  33492863 ccatttatgcttt-catgcctgattctaccca 33492833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 13218800 - 13218672
Alignment:
Q  151 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttgcca 250  Q
    ||||||||| |||||||||| ||||| |||  |||| || |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | |||    
T  13218800 tgctcaaaactaacatatttcatgtgttaatctaggtaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtatttatacca 13218701  T
Q  251 tttatgctttacatgcctgattctaccca 279  Q
    |||||||||||||||||||||||||||||    
T  13218700 tttatgctttacatgcctgattctaccca 13218672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 39453350 - 39453462
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    |||||||||||||||| |||| ||||||| ||| ||||| |  |||||||||||||||||||||||||||||| ||| ||||||||||  |||| |||||    
T  39453350 aagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttg 39453448  T
Q  248 ccatttatgcttta 261  Q
    ||||||||||||||    
T  39453449 ccatttatgcttta 39453462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 25242410 - 25242528
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    |||||||||||| ||||||||| |||||| ||| |||||||  ||| ||||||||| |||||||||||||||| |||||||| |||   |  | |||||     
T  25242410 aagtgctcaaaactaacatattctatgtgttaatttaggcattttaatgacttgttctgcaagttatctaaggaaaagctactattgttgcattttttta 25242509  T
Q  248 ccatttatgctttacatgc 266  Q
    |||||||||||||| ||||    
T  25242510 ccatttatgctttaaatgc 25242528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 276
Target Start/End: Original strand, 13829598 - 13829725
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||| |||| |||||| ||||| ||| ||| |||  ||||| ||||||  | |||||||||| ||| |||||||||| || | |||| ||||     
T  13829598 aagtgctcaaaggtaatatatttcatgtgttaaattatgcattttagtaacttgtcctacaagttatctgaggaaaagctaccaatt-attgtactttta 13829696  T
Q  248 ccatttatgctttacatgcctgattctac 276  Q
    | |||| ||||||||||||||||||||||    
T  13829697 ctatttgtgctttacatgcctgattctac 13829725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 16129004 - 16129115
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||| ||| ||| ||||| |||  ||||||  ||| |||||||||||||||||||||||||| ||||| | ||||||  |||| |||      
T  16129004 aagtgctcaaaagtaccatctttcatgtgttaaaataggcattttaatgacttgttttgcaagttatctaaggaaaagcaatcatttg-ttgtaatttga 16129102  T
Q  248 ccatttatgcttt 260  Q
    |||||||||||||    
T  16129103 ccatttatgcttt 16129115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 174033 - 174168
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |     
T  174033 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 174132  T
Q  243 ttttgccatttatgctttacatgcctgattctaccc 278  Q
    |||| |||||||||||||||||||||||||||||||    
T  174133 ttttaccatttatgctttacatgcctgattctaccc 174168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 185191 - 185326
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||||||||| |     
T  185191 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggaaaattaatgacttgttttgcaagttatataaggaaaagctaccatttgagtgcaa 185290  T
Q  243 ttttgccatttatgctttacatgcctgattctaccc 278  Q
    |||| |||||||||||||||||||||||||||||||    
T  185291 ttttaccatttatgctttacatgcctgattctaccc 185326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 148 - 275
Target Start/End: Original strand, 27347440 - 27347567
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||     
T  27347440 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 27347539  T
Q  248 ccatttatgctttacatgcctgattcta 275  Q
    ||||||||||||||||||||||||||||    
T  27347540 ccatttatgctttacatgcctgattcta 27347567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 3298195 - 3298325
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||     
T  3298195 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtttattttta 3298294  T
Q  248 ccatttatgctttacatgcctgattctaccc 278  Q
    |||||||||||||||||| ||||||||||||    
T  3298295 ccatttatgctttacatgtctgattctaccc 3298325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 27353515 - 27353651
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |     
T  27353515 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgcaa 27353614  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    |||| ||||||||||||||||||||||||||||||||    
T  27353615 ttttaccatttatgctttacatgcctgattctaccca 27353651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 28926917 - 28926781
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |     
T  28926917 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactttttttgcaagttatctaaggaaaagctaccatttgagtgcaa 28926818  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28926817 ttttaccatttatgctttacatgcctgattctaccca 28926781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 148 - 276
Target Start/End: Original strand, 22179903 - 22180031
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| ||||     
T  22179903 aagtgctcaaaagtaacatattttatgcgttaacttaggcaaattagtgacttgtttcgcaagttatctaaggaaaatctaccatttgagtgtaatttta 22180002  T
Q  248 ccatttatgctttacatgcctgattctac 276  Q
    |||||||||||||||||||||||||||||    
T  22180003 ccatttatgctttacatgcctgattctac 22180031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 8744142 - 8744005
Alignment:
Q  142 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgta 241  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  8744142 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattattgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 8744043  T
Q  242 tttttgccatttatgctttacatgcctgattctaccca 279  Q
     | ||   ||||||||||||||||||||||||||||||    
T  8744042 atattattatttatgctttacatgcctgattctaccca 8744005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 9068935 - 9068804
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |  |||     
T  9068935 aagtgcccaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatccaaggaaaagctaccatttgagtgcaacttta 9068836  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  9068835 ccatttatgctttacatgcctgattctaccca 9068804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 36737633 - 36737498
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||| ||||||| ||||||||||||| |||  ||||||  || |||||||||| |||||||||||||||| || |||| || |||  |||||    
T  36737633 ttgataagtgctaaaaagtaccatattttatgtgttaatctaggcattttggtgacttgttctgcaagttatctaaggaaaggctatcaattg-ttgtat 36737535  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
     | | ||||||||||||||||||||||||||||||||    
T  36737534 ctataccatttatgctttacatgcctgattctaccca 36737498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 1606596 - 1606726
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    |||||||||||||||| |||||| ||||| ||| |||||||  ||||||||||||| |||||||||||||||  ||||||  || |||  |||| ||||     
T  1606596 aagtgctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttctgcaagttatctaagaaaaagctttcaattg-ttgtactttta 1606694  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||| |||||||| |||||||||||||    
T  1606695 ccatttatgttttacatgtctgattctaccca 1606726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 16957901 - 16957972
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaag 219  Q
    ||||||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||||    
T  16957901 aagtgctcaaaagtaacatattttatgcgttaatctaggcatattagtgacttgttttgcaagttatctaag 16957972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 28369584 - 28369642
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttg 201  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  28369584 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttg 28369642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 4435621 - 4435537
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagct 227  Q
    |||| |||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||||||||||| || ||||||    
T  4435621 ttgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaagttatctatggaaaagct 4435537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 21687382 - 21687462
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaagggaaagct 227  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| || ||||||    
T  21687382 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21687462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 21691706 - 21691786
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaagggaaagct 227  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| || ||||||    
T  21691706 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21691786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 24040006 - 24040117
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    |||||||||||||||  || ||| ||||| |||  ||||||  |||||||||||||||| ||||||| ||||| ||||| | ||||||  |||| |||      
T  24040006 aagtgctcaaaagtattatctttcatgtgttaaaataggcattttagtgacttgttttgtaagttatataaggaaaagcaatcatttg-ttgtaatttga 24040104  T
Q  248 ccatttatgcttt 260  Q
    |||||||||||||    
T  24040105 ccatttatgcttt 24040117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 22817832 - 22817963
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  22817832 aagtgctcaaaagtaacatatttcaggtgttaacttaggcaaaatagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 22817931  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  22817932 ccatttatgctttacatgcctgattctaccca 22817963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 7143044 - 7143182
Alignment:
Q  141 gcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgt 240  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7143044 gcttgataagtgctcaaaagtaacatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgt 7143143  T
Q  241 atttttgccatttatgctttacatgcctgattctaccca 279  Q
    | | || ||||||||||||||||||||||||||||||||    
T  7143144 aatattaccatttatgctttacatgcctgattctaccca 7143182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 148 - 278
Target Start/End: Complemental strand, 31159044 - 31158914
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||     
T  31159044 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 31158945  T
Q  248 ccatttatgctttacatgcctgattctaccc 278  Q
    |||||||||||||||||||||||||||||||    
T  31158944 ccatttatgctttacatgcctgattctaccc 31158914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 23794481 - 23794618
Alignment:
Q  142 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgta 241  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  23794481 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgca 23794580  T
Q  242 tttttgccatttatgctttacatgcctgattctaccca 279  Q
     |||| |||||||| |||||||||||||||||||||||    
T  23794581 attttaccatttattctttacatgcctgattctaccca 23794618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 10347074 - 10346943
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||     
T  10347074 aagtgctcaaaagtaacatttttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 10346975  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  10346974 ccatttatgctttacatgcctgattctaccca 10346943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 2630809 - 2630944
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |     
T  2630809 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 2630908  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  2630909 ttttaccatttatgcttt-catgcctgattctaccca 2630944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 12183259 - 12183390
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||| | ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||     
T  12183259 aagtgctcaaaagtaacatatttcatgtgttaacttatgtaaattagtgacctgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 12183358  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    |||||||||||| |||||||||||||||||||    
T  12183359 ccatttatgcttcacatgcctgattctaccca 12183390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 22322652 - 22322521
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||     
T  22322652 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagcgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 22322553  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||| ||| ||||||||||    
T  22322552 ccatttatgctttacatacctaattctaccca 22322521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 19473033 - 19472897
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||    
T  19473033 ttgataagtgcttaaaagtaacatatttcatgtgttaatttaggcaaattagtgacttattttgcaagttatctaaggaaaagctaccttttgagtgtat 19472934  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  19472933 ttttaccatttatgctttacatgcctaattctaccca 19472897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 45501400 - 45501268
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgactt-gttttgcaagttatctaagggaaagctaccatttgagtgtattttt 246  Q
    ||||||||||||||||||||||| |||||||||  ||||||| |||||||||| |||||| || |||||||||| ||||||| ||||||||||||||| |    
T  45501400 aagtgctcaaaagtaacatatttcatgtgctaatctaggcaatttagtgacttagttttgaaatttatctaaggaaaagctatcatttgagtgtatttat 45501301  T
Q  247 gccatttatgctttacatgcctgattctaccca 279  Q
     ||||||||| ||||||||||||||||||||||    
T  45501300 accatttatgttttacatgcctgattctaccca 45501268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 2477074 - 2477203
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||| ||||||||||||||||||||| | |||| ||||||  ||||||||||||||||||| |||||||||  |||||||| | ||||||||||||||     
T  2477074 aagtgatcaaaagtaacatattttatgcgttaacctaggcattttagtgacttgttttgcaacttatctaagaaaaagctactaattgagtgtattttta 2477173  T
Q  248 ccatttatgctttacatgcctgattctacc 277  Q
    ||||||||| ||||||||||||||||||||    
T  2477174 ccatttatgttttacatgcctgattctacc 2477203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 143 - 275
Target Start/End: Complemental strand, 2798314 - 2798182
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||| |||||| |||||||||||||||| |||  ||||||| ||||||||||||| |||||||||||||||| ||| | | |||||||||||||    
T  2798314 ttgataagtgttcaaaaataacatattttatgtgttaatctaggcaatttagtgacttgttctgcaagttatctaaggaaaaacaatcatttgagtgtat 2798215  T
Q  243 ttttgccatttatgctttacatgcctgattcta 275  Q
    || | ||||||||||||||||| ||||||||||    
T  2798214 ttataccatttatgctttacatacctgattcta 2798182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 31878015 - 31878146
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||| |||  ||| |||||||||||| |||  |||| || |||||||||| |  ||||||||||||| || ||||||| ||||||||||||||| |     
T  31878015 aagtgcttaaagttaatatattttatgtgttaatataggtaatttagtgacttatcctgcaagttatctagggaaaagctatcatttgagtgtatttata 31878114  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  31878115 ccatttatgctttacatgcctgattctaccca 31878146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 31001456 - 31001376
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagcta 228  Q
    ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| | |||||||||||||  |||||||    
T  31001456 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctccaagttatctaagaaaaagcta 31001376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 8139920 - 8139848
Alignment:
Q  157 aaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctac 229  Q
    ||||||| |||||| ||||| ||  |||||||  |||||||||| ||||||| ||||||||||| ||||||||    
T  8139920 aaagtaatatatttcatgtgttattttaggcactttagtgacttattttgcaggttatctaaggaaaagctac 8139848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 20403074 - 20403208
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggg-aaagctaccatttgagtgta 241  Q
    |||| |||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||| |||  |||||| |||||||| |||||| || |    
T  20403074 ttgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaaattacttaagggaaaagctacaatttga-tgca 20403172  T
Q  242 tttttgccatttatgctttacatgcctgattctaccc 278  Q
     || |||| |||||||||||  ||||| |||||||||    
T  20403173 attatgccgtttatgcttta-gtgccttattctaccc 20403208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 278
Target Start/End: Original strand, 29863923 - 29864049
Alignment:
Q  151 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggg-aaagctaccatttgagtgtatttttgcc 249  Q
    ||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||| |||  |||||| |||||||| |||||| |  | || ||||    
T  29863923 tgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaaattacttaagggaaaagctacaatttga-tacaattatgcc 29864021  T
Q  250 atttatgctttacatgcctgattctaccc 278  Q
    |||||||||||| |||||| |||||||||    
T  29864022 atttatgcttta-atgccttattctaccc 29864049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 24169489 - 24169396
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttga 236  Q
    |||| |||||||||||||| | |||||| ||||  ||  |||||||  ||||||| |||||||||||||||  ||||| |||| ||| ||||||    
T  24169489 ttgataagtgctcaaaagtgatatatttcatgtattattttaggcactttagtgatttgttttgcaagttacttaaggaaaagttacaatttga 24169396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 26511269 - 26511138
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||     
T  26511269 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataatttta 26511170  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  26511169 ccatttatgctttacatgcctgattctaccca 26511138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 26516385 - 26516254
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||     
T  26516385 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataatttta 26516286  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  26516285 ccatttatgctttacatgcctgattctaccca 26516254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 3538441 - 3538571
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||     
T  3538441 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 3538540  T
Q  248 ccatttatgctttacatgcctgattctaccc 278  Q
    |||||||||||||||||||||||||||||||    
T  3538541 ccatttatgctttacatgcctgattctaccc 3538571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 143 - 275
Target Start/End: Original strand, 34005893 - 34006025
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |     
T  34005893 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaatgctaccatttgagtgcaa 34005992  T
Q  243 ttttgccatttatgctttacatgcctgattcta 275  Q
    |||| ||||||||||||||||||||||||||||    
T  34005993 ttttaccatttatgctttacatgcctgattcta 34006025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 9934753 - 9934626
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||     
T  9934753 aagtgcttaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttgttttgcaagttatctaaggaaaaactaccatttgagtgtattttta 9934654  T
Q  248 ccatttatgctttacatgcctgattcta 275  Q
    ||||||||||||||||||||||||||||    
T  9934653 ccatttatgctttacatgcctgattcta 9934626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 143 - 275
Target Start/End: Complemental strand, 24161997 - 24161866
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| |||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  24161997 ttgataagtgctcaaaagtaacat--tttatgtgttaacttaggcaaattagagacttgttttgcaagttatataaggaaaagctaccatttgagtgtat 24161900  T
Q  243 -ttttgccatttatgctttacatgcctgattcta 275  Q
     |||| ||||||||||||||||||||||||||||    
T  24161899 tttttaccatttatgctttacatgcctgattcta 24161866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 151 - 276
Target Start/End: Original strand, 26603622 - 26603746
Alignment:
Q  151 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttgcca 250  Q
    ||||||||||| | |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||| |||  ||||| |||  |||| |||| |||    
T  26603622 tgctcaaaagtgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaatgtaccaattg-ttgtacttttacca 26603720  T
Q  251 tttatgctttacatgcctgattctac 276  Q
    ||||||||||||||||||||||||||    
T  26603721 tttatgctttacatgcctgattctac 26603746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 31131280 - 31131392
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||| ||||||||||||||||||||| |||  ||||||  |||||||||||||||||||||||||||||| ||| ||| || |||  ||||||| |     
T  31131280 aagtgcttaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaatctatcaattg-ttgtatttata 31131378  T
Q  248 ccatttatgcttta 261  Q
    ||||||||||||||    
T  31131379 ccatttatgcttta 31131392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 273
Target Start/End: Original strand, 15641761 - 15641842
Alignment:
Q  191 ttagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttgccatttatgctttacatgcctgattc 273  Q
    ||||||||||||| |||||||||||||||| |||||||||| |||  |||| |||| ||||||||||||||||||||||||||    
T  15641761 ttagtgacttgttctgcaagttatctaaggaaaagctaccaattg-ttgtacttttaccatttatgctttacatgcctgattc 15641842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 2298290 - 2298402
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||| |||||||| | |||||| ||||| ||  |||| ||  |||||||||||||||||||||||||||||| ||| |||| |||||| |||| || ||    
T  2298290 aagtgttcaaaagtgatatatttcatgtgttattttagacactttagtgacttgttttgcaagttatctaaggaaaaactacaatttga-tgtaattatg 2298388  T
Q  248 ccatttatgcttta 261  Q
     || ||||||||||    
T  2298389 tcaattatgcttta 2298402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 354508 - 354377
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||     
T  354508 aagtgctcaaaagtaacatatttcatgtgttaacttagacaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 354409  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||||||||||||||||||||    
T  354408 ccatttatgctttacatgcctgattctaccca 354377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 954 - 1089
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |     
T  954 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaa 1052  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    |||| ||||||||||||||||||||||||||||||||    
T  1053 ttttaccatttatgctttacatgcctgattctaccca 1089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 117404 - 117268
Alignment:
Q  143 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtat 242  Q
    |||| ||||||||||||||||||||||| ||||| |||  ||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |    
T  117404 ttgataagtgctcaaaagtaacatatttcatgtgttaatctaggcaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtgt 117305  T
Q  243 ttttgccatttatgctttacatgcctgattctaccca 279  Q
    || | |||||||||||||||||| |||||||||||||    
T  117304 ttataccatttatgctttacatgtctgattctaccca 117268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 80008 - 79922
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccattt 234  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  80008 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccattt 79922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 17241 - 17110
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||||||||| |||| |||||   |||||||||||||||||||||||||||||| ||||| || |  ||| ||||||| |     
T  17241 aagtgctcaaaagtaacatattttatgtgttaacctaggcttgttagtgacttgttttgcaagttatctaaggaaaagccactaagtgattgtatttgta 17142  T
Q  248 ccatttatgctttacatgcctgattctaccca 279  Q
    ||||||||||||||| ||| ||||||||||||    
T  17141 ccatttatgctttacgtgcttgattctaccca 17110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 272
Target Start/End: Original strand, 1851 - 1974
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    ||||||||||||||||||||||||||||| ||| |||||||  ||||| ||||||| |||||||||||||||| ||||||||||  |  ||||  ||||     
T  1851 aagtgctcaaaagtaacatattttatgtgttaatttaggcattttagttacttgttctgcaagttatctaaggaaaagctaccaaat-tgtgttctttta 1949  T
Q  248 ccatttatgctttacatgcctgatt 272  Q
    |||||||||||||||||||||||||    
T  1950 ccatttatgctttacatgcctgatt 1974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 276
Target Start/End: Complemental strand, 10324 - 10197
Alignment:
Q  148 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaagggaaagctaccatttgagtgtatttttg 247  Q
    |||||||||||||||| |||| ||||||| ||| ||||| |  |||||||||||||||||||||||||||||| ||| ||||||||||  |||| |||||    
T  10324 aagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttg 10226  T
Q  248 ccatttatgctttacatgcctgattctac 276  Q
    ||||||||||||||  ||||| |||||||    
T  10225 ccatttatgctttatgtgccttattctac 10197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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