View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_137 (Length: 280)
Name: NF10233A_low_137
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_137 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 36724252 - 36724378
Alignment:
| Q |
139 |
actgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgt |
238 |
Q |
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| T |
36724252 |
actgtctacaagcatctataatgcatctaaattcactactatcttatatgcttgttctaagagcatccacatccttcacagagtctagagaaaaatctgt |
36724351 |
T |
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| Q |
239 |
attatcaaattgaaggtctgatgtcca |
265 |
Q |
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| T |
36724352 |
attatcaaattgaaggtctgatgtcca |
36724378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 36723764 - 36723895
Alignment:
| Q |
21 |
atcatcataggtgtgggagttagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactttattaaactcaatttgagagtttt |
120 |
Q |
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| T |
36723764 |
atcatcataggtgtgagagctagtattatgtgggactatctgagctaactcgtgagcaatcccattagtctgactctattaaactcaacttaagagtttt |
36723863 |
T |
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| Q |
121 |
gaaatctactatgaaataactgtctacaagca |
152 |
Q |
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| T |
36723864 |
gaaatctactatgaaataactgtctacaagca |
36723895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 266
Target Start/End: Complemental strand, 712314 - 712145
Alignment:
| Q |
97 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
196 |
Q |
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| T |
712314 |
tattaaactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttctacacatgttct |
712215 |
T |
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| Q |
197 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccat |
266 |
Q |
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| T |
712214 |
aaaagcatccacaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgtccat |
712145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 717603 - 717356
Alignment:
| Q |
19 |
acatcatcataggtgtgggagttagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactt-tattaaactcaatttgagagt |
117 |
Q |
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||||||||||| ||| | || ||| |||||||||| |||| ||||||||||| | || | | ||||||| || || |||||||||||| ||||||| |
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| T |
717603 |
acatcatcataagtgagagatctagcattatgtggggctatatgagctaactcgtaagtgatcccattagcttgtctcctattaaactcaacatgagagt |
717504 |
T |
|
| Q |
118 |
tttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcac |
217 |
Q |
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| T |
717503 |
tttgaaatctactttggaataattgtctacattcaactataatacatccaaattcactactatctcctacacatcttctaaaagcatcaacaaccttctt |
717404 |
T |
|
| Q |
218 |
aaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtcca |
265 |
Q |
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| T |
717403 |
agagtctagagctaaatctacattatcaaattgaaggtgtgatgtcca |
717356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 265
Target Start/End: Complemental strand, 14541248 - 14541080
Alignment:
| Q |
97 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
196 |
Q |
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||||||||||||| ||||||||| ||| |||| ||||| | ||||||||| |||||||||| |||||||||| || |||||||| || |||||| |
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| T |
14541248 |
tattaaactcaatacgagagtttttaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatcttctacatatgttct |
14541149 |
T |
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| Q |
197 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtcca |
265 |
Q |
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| T |
14541148 |
aaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgtcca |
14541080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 2087537 - 2087573
Alignment:
| Q |
230 |
aaaatctgtattatcaaattgaaggtctgatgtccat |
266 |
Q |
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||||||| | ||||||||||||||||||||||||||| |
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| T |
2087537 |
aaaatctattttatcaaattgaaggtctgatgtccat |
2087573 |
T |
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