View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_138 (Length: 279)
Name: NF10233A_low_138
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_138 |
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| [»] scaffold0684 (1 HSPs) |
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| [»] scaffold0163 (1 HSPs) |
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Alignment Details
Target: scaffold0684 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 3818 - 3968
Alignment:
| Q |
4 |
cgcgggctggtgttcattgtttcccttttgttggaaagaacatggaacccttagacgacgctaaaagagaaaagcggtatcttaattactacccttttac |
103 |
Q |
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| T |
3818 |
cgcgggctgctgttcgttgtttcccttttgttggaaagaacatggaacctttagacgacgctaaaagagaaaagcggtatcttaattactacccttttac |
3917 |
T |
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| Q |
104 |
agctctaccatggaaaaaagcgctttcataaagtttagttaattaataaaa |
154 |
Q |
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| T |
3918 |
agctctaccatggataaaagcgctttcataaagtttagttaattaataaaa |
3968 |
T |
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Target: scaffold0163 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 4300 - 4150
Alignment:
| Q |
4 |
cgcgggctggtgttcattgtttcccttttgttggaaagaacatggaacccttagacgacgctaaaagagaaaagcggtatcttaattactacccttttac |
103 |
Q |
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| T |
4300 |
cgcgggctgctgttcgttgtttcccttttgttggaaagaacatggaacctttagacgacgctaaaagagaaaagcggtatcttaattactacccttttac |
4201 |
T |
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| Q |
104 |
agctctaccatggaaaaaagcgctttcataaagtttagttaattaataaaa |
154 |
Q |
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| T |
4200 |
agctctaccatggataaaagcgctttcataaagtttagttaattaataaaa |
4150 |
T |
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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 149 - 272
Target Start/End: Original strand, 11441781 - 11441904
Alignment:
| Q |
149 |
ataaaagagcgttgctatatcacacgatnnnnnnnccgcacgaaccgacaagaacaagctttcaatacatctgtgcgtacacgtctctaggccagcacct |
248 |
Q |
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| T |
11441781 |
ataaaagagcgttgctatatcgcacgataaaaaaaccgcacgaacccacacgaacaagctttcaacacatctgtgtttacacgtctcttggccagcacct |
11441880 |
T |
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| Q |
249 |
tcataaaagccgcaagcaccgtct |
272 |
Q |
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| T |
11441881 |
tcataaaagccgcaagcaccgtct |
11441904 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 47656579 - 47656493
Alignment:
| Q |
186 |
gcacgaaccgacaagaacaagctttcaatacatctgtgcgtacacgtctctaggccagcaccttcataaaagccgcaagcaccgtct |
272 |
Q |
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| T |
47656579 |
gcacgaacccacacgaacaagctttcaacacatctgtgcttacacgtctcttgaccagcaccttcataaaagccgcaagcaccgtct |
47656493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 54923013 - 54922938
Alignment:
| Q |
200 |
gaacaagctttcaatacatctgtgcgtacacgtctctaggccagcaccttcataaaagccgcaagcaccgtcttcgc |
276 |
Q |
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| T |
54923013 |
gaacaagctt-caacacatctgtgcgtacacgtctcttggctagcaccgtcataaaagacgcaagcaccgtcttcgc |
54922938 |
T |
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