View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_139 (Length: 279)
Name: NF10233A_low_139
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_139 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 7058460 - 7058733
Alignment:
| Q |
1 |
atgacatatgcaactgtgaaggtaagagattattaataacaagtgatattttgttctattaagaaaaaacaatcaatttggtgaaaacaattaagtgtct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
7058460 |
atgacatatgcaactgtgaaggtaagagattattaataacaagtgatattttgttctattaagaaaaaacactcaatttggtgaaaacatttaagtgtct |
7058559 |
T |
|
| Q |
101 |
ttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttt |
200 |
Q |
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||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7058560 |
ttgatgaaattgtgtaatttccttatatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagctatgttttc |
7058659 |
T |
|
| Q |
201 |
ctatgttcactagatggatatctaatttgcctttgtaaatcaaaagcctaagatggcataaatatatgagatgt |
274 |
Q |
| |
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| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
7058660 |
ccatgttcactaggtggatatctaatttgcctttgtaaatcagaagcctaagatggcataaatatatgatatgt |
7058733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 7049539 - 7049818
Alignment:
| Q |
1 |
atgacatatgcaactgtgaaggtaagagattattaataa-----caagtgatattttgttctattaagaaaaaacaatcaatttggtgaaaacaattaag |
95 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| | ||||| | ||||||||| ||||| ||||||| | ||||| ||||||||| ||||| |
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| T |
7049539 |
atgacatatgcaactgtgaaggtaagaaattattaattaaatcacaagtactcttttgttcttttaagtaaaaacacttaatttcgtgaaaacatttaag |
7049638 |
T |
|
| Q |
96 |
tgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaa-ttttgcagggttcaggacatatagctcctgagtacactcctgagttat |
194 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7049639 |
tgtctctgatgagattgtgcaatttccttacatcaattttcatgtaattaaattttgcagggttcaggacatatagctcctgagtacactcctgagctat |
7049738 |
T |
|
| Q |
195 |
gtttttctatgttcactagatggatatctaatttgcctttgtaaatcaaaagcctaagatggcataaatatatgagatgt |
274 |
Q |
| |
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||||| | |||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7049739 |
gttttcccatgttctctaggtggatatctaatttgcctttgtaaatcataagcctaagatggcataaatatatgagatgt |
7049818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 7042386 - 7042665
Alignment:
| Q |
1 |
atgacatatgcaactgtgaaggtaagagattattaataaca-----agtgatattttgttctattaagaaaaa-acaatcaatttggtgaaaacaattaa |
94 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||| | | |||| | |||||||| |||| ||||| ||| |||||||||||| || | || |
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| T |
7042386 |
atgacatttgcaactgtgaaggtaagaaattagtaattaaatcataagtgctcttttgttcatttaataaaaacacactcaatttggtgagaatatgcaa |
7042485 |
T |
|
| Q |
95 |
gtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttat |
194 |
Q |
| |
|
||||||||||||||||||| ||| || ||| ||| |||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| || |
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| T |
7042486 |
gtgtctttgatgagattgtacaacatctttagatcgattttcgtgtaattaattttgcagggttcgggacatacagctcctgagtacactcctgagcaat |
7042585 |
T |
|
| Q |
195 |
gtttttctatgttcactagatggatatctaatttgcctttgtaaatcaaaagcctaagatggcataaatatatgagatgt |
274 |
Q |
| |
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||||| | ||||||||||| |||||||||||||||||||||||||||| || | ||||||| ||||||||||||||||| |
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| T |
7042586 |
gttttcccatgttcactaggtggatatctaatttgcctttgtaaatcagaatctcaagatggaataaatatatgagatgt |
7042665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 7007965 - 7008111
Alignment:
| Q |
93 |
aagtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagtt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
7007965 |
aagtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttctggacatatagctccttagtacactcctgagca |
7008064 |
T |
|
| Q |
193 |
atgtttttctatgttcactagatggatatctaatttgcctttgtaaa |
239 |
Q |
| |
|
||||||| | |||||| ||| |||||||||||||||| |||||||| |
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|
| T |
7008065 |
atgttttcccatgttccttaggtggatatctaatttgcgtttgtaaa |
7008111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 7006155 - 7006265
Alignment:
| Q |
129 |
caattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgtttttctatgttcactagatggatatctaattt |
228 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||||| |
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| T |
7006155 |
caattttcatgtaattaattttgcagggttcaggacatacagctcctgagtacactcctgagcaatgttttcccatgttcactaggtggatatctaattt |
7006254 |
T |
|
| Q |
229 |
gcctttgtaaa |
239 |
Q |
| |
|
||||||||||| |
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|
| T |
7006255 |
gcctttgtaaa |
7006265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 7022817 - 7022942
Alignment:
| Q |
139 |
gtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgtttttctatgttcactagatggatatctaatttgcctttgtaa |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| | | ||||||| ||||||| | ||||||||||| |||||||||||||||||||||||| |
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| T |
7022817 |
gtaattaattttgcagggttcaggacatacagctcctgcggatgctcctgaacaatgttttgccatgttcactaggtggatatctaatttgcctttgtaa |
7022916 |
T |
|
| Q |
239 |
atcaaaagcctaagatggcataaatat |
265 |
Q |
| |
|
|||||||| || | ||||||||||||| |
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|
| T |
7022917 |
atcaaaag-ctgatatggcataaatat |
7022942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 6997402 - 6997495
Alignment:
| Q |
149 |
ttgcagggttcaggacatatagctcctgagtacactcctgagttatgtttttctatgttcactagatggatatctaatttgcctttgtaaatca |
242 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
6997402 |
ttgcagggttcaggacatacagctcctgagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaaatca |
6997495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 7015916 - 7016030
Alignment:
| Q |
140 |
taattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgtttttctatgttcactagatggatatctaatttgcctttgtaaa |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||| || |
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|
| T |
7015916 |
taattaattttgcagggttcaggacatacagctcctgagtacactcctgatcaatgttttggcatgttcactaggtggatatctaatttacctttgt-aa |
7016014 |
T |
|
| Q |
240 |
tcaaaagcctaagatg |
255 |
Q |
| |
|
||| |||| ||||||| |
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|
| T |
7016015 |
tcagaagcataagatg |
7016030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 7029531 - 7029671
Alignment:
| Q |
98 |
tctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctg-agtacactcctgagttatgt |
196 |
Q |
| |
|
||||||||| || ||||| | || ||| ||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||| |
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| T |
7029531 |
tctttgatgtgactgtgctaatttgttatatcaatttttgggtaattaattttgcagggttcaggacatacagctcctgcagt-cactcctgagcaatgt |
7029629 |
T |
|
| Q |
197 |
ttttctatgttcactagatggatatctaatttgcctttgtaa |
238 |
Q |
| |
|
|| | |||||||| || |||| ||||||||||||||||||| |
|
|
| T |
7029630 |
ttagccatgttcaccaggtggacatctaatttgcctttgtaa |
7029671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 7007154 - 7007247
Alignment:
| Q |
1 |
atgacatatgcaactgtgaaggtaagagattattaataa-----caagtgatattttgttctattaagaaaaaacaatcaatttggtgaaaaca |
89 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||| | |||||| | ||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
7007154 |
atgacatttgcaactgtgaaggtaagaaattattaattaaatcacaagtgctcttttgttcttttaagaaaaaacagtcaatttggtgaaaaca |
7007247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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