View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_142 (Length: 278)
Name: NF10233A_low_142
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_142 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 14721984 - 14722044
Alignment:
| Q |
12 |
atggacatcaacatttttgctaaccccactaaatttgaccatctatgaacatcactttaca |
72 |
Q |
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| T |
14721984 |
atggacatcaacatttttgctaaccccactaaatttgaccatctatgaacatcactttaca |
14722044 |
T |
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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 5150043 - 5149980
Alignment:
| Q |
215 |
cttcttattcttggttcaacaatgttcctccttaggtcaatgttgaatttgtaaggaataagac |
278 |
Q |
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| T |
5150043 |
cttcttattcttggttcaacaatgtaccttctcaggttaatgttgaatttgtaaagaataagac |
5149980 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 39465259 - 39465207
Alignment:
| Q |
20 |
caacatttttgctaaccccactaaatttgaccatctatgaacatcactttaca |
72 |
Q |
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| T |
39465259 |
caacatttttgctaactccactaaatctgaccatatatgaacattactttaca |
39465207 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 26448452 - 26448389
Alignment:
| Q |
215 |
cttcttattcttggttcaacaatgttcctccttaggtcaatgttgaatttgtaaggaataagac |
278 |
Q |
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| T |
26448452 |
cttcttattcttggttcaacactatacctcctcaggttaatgttgaatttgttaggaacaagac |
26448389 |
T |
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