View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_144 (Length: 274)
Name: NF10233A_low_144
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_144 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 1047305 - 1047111
Alignment:
| Q |
40 |
gacatcacaattatcttttggtactgactcaataccactccaagtattgtcctctggactccatataatgcgttcgtgaagactaagcgtttggttcaaa |
139 |
Q |
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| T |
1047305 |
gacatcacaatcatcttttggtactgactcaataccactccaagtattgtcctctggactccatataatgcgttcgtgaagactaagcgtttggttcaaa |
1047206 |
T |
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| Q |
140 |
taagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcacggatcttgcaactacaacagttgatgt |
234 |
Q |
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| T |
1047205 |
taagttattgaaacattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaacaacaacagttgatgt |
1047111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 1072118 - 1071951
Alignment:
| Q |
40 |
gacatcacaattatcttttggtactgactcaataccactccaagtattgtcctctggactccatataatgcgttcgtgaagactaagcgtttggttcaaa |
139 |
Q |
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| T |
1072118 |
gacatcacaatcattttttggtactgactgaatatcgctccaagtgttgtcctctggactccatataacgcgttcatgaagactaagcgtttggttcaaa |
1072019 |
T |
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| Q |
140 |
taagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcac |
207 |
Q |
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| T |
1072018 |
taagttattgaaaccatactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcac |
1071951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 1087779 - 1087612
Alignment:
| Q |
40 |
gacatcacaattatcttttggtactgactcaataccactccaagtattgtcctctggactccatataatgcgttcgtgaagactaagcgtttggttcaaa |
139 |
Q |
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| T |
1087779 |
gacatcacaatcatcttttggcaacgactcaataacactccaagtatcgtcttctggaatccaattaacacgttcgcgatgactagttgtttggttcaaa |
1087680 |
T |
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| Q |
140 |
taagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcac |
207 |
Q |
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| T |
1087679 |
taagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcac |
1087612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 1104244 - 1104165
Alignment:
| Q |
128 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcac |
207 |
Q |
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| T |
1104244 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcac |
1104165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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