View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_156 (Length: 264)
Name: NF10233A_low_156
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_156 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 48342141 - 48342397
Alignment:
| Q |
7 |
ttggtgttgaacagtttggattctagaaacttgacttcatttctacgttgagtgcggaaagcaataatgaataagcagatattacagatcagatgaggtc |
106 |
Q |
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| T |
48342141 |
ttggtgttgaacagtttggattctagaaacttgacttcatttctacgttgagtgcggaaagcaataatgaataagcagatattacagatcagatgaggtc |
48342240 |
T |
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| Q |
107 |
aatattaagcttaagtactgttttcagcaggcaatttctcaacgttattggattccactttatgtgnnnnnnntctaataaaataataatcacaagtttt |
206 |
Q |
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| T |
48342241 |
aatattaagcttaagtactgttttcagcaggcaatttctcaacgttattggattccactttatgtgaaaaaaatctaataaaataataatcacaagtttt |
48342340 |
T |
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| Q |
207 |
atttactttaacctttgttatatatataatattgaaggtgagagttctgagagtgtga |
264 |
Q |
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| T |
48342341 |
-tttactttatcctttgttatatatataatattgaaggtgagagttctgagagtgtga |
48342397 |
T |
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