View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_158 (Length: 263)
Name: NF10233A_low_158
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_158 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 30810322 - 30810542
Alignment:
| Q |
23 |
cacaatctcccctcacattaaatgtgtatgtctacccctcttcatctactatattatata--aatacatagttaccttcaaatttcttttacactataaa |
120 |
Q |
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| T |
30810322 |
cacaatctcccctcacattaaatgtgtatgtctacctctcttcatctactatattatatataaatacaaagttaccttcaaatttcttttacactataaa |
30810421 |
T |
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| Q |
121 |
aactct--tcaacatttatttacttattctatcttcaatattcattagtccttcttttaacaaatgattataatataatattgacacaataatggctcgc |
218 |
Q |
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| T |
30810422 |
aactctattcaacatttatttacttattctatcttcaatattgattagtccttcttttaacaaatgattataatataatattgacacaacaatggctcgc |
30810521 |
T |
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| Q |
219 |
ggctatatccatgaacacatg |
239 |
Q |
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| T |
30810522 |
ggctatatccatgaacacatg |
30810542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 30814920 - 30815028
Alignment:
| Q |
142 |
ttattctatcttcaatattcattagtccttcttttaacaaatgattataatataatattgacacaataatggctcgcggctatatccatgaacacatgat |
241 |
Q |
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| T |
30814920 |
ttattttattttcaatattgattggtc-ttcttttaacaaatgattataatataatattgacacaacaatgactcacgactagat-tatgaatacatgat |
30815017 |
T |
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| Q |
242 |
atatcctaata |
252 |
Q |
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|||| |||||| |
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| T |
30815018 |
atatgctaata |
30815028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 30820124 - 30820209
Alignment:
| Q |
141 |
cttattctatcttcaatattcattagtccttcttttaacaaatgattataatataatattgacacaataatggctcgcggctatat |
226 |
Q |
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| T |
30820124 |
cttattcgaacttcaatattgattggtccttcttttaacaaatgactataatataatattggcacaacagtgactcacggctatat |
30820209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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