View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_159 (Length: 263)
Name: NF10233A_low_159
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_159 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 45643011 - 45643255
Alignment:
| Q |
8 |
atggtgttgcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45643011 |
atggtgttgcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgt |
45643110 |
T |
|
| Q |
108 |
tcccgcttctttgaggggaatggttgtggcaccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatcc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
45643111 |
tcccgcttctttgaggggaatggttgtggcaccgctactgtctgtactaattgaatttccagttgtgcatgatttatagtcactttctttaacttcatcc |
45643210 |
T |
|
| Q |
208 |
actgtgtgccacccagcttcatagttgaacactgtcaataataaagtta |
256 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
45643211 |
actgtgtg---cccagctacatagttgaacactgtc-ataataaagtta |
45643255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 42 - 256
Target Start/End: Complemental strand, 45703282 - 45703063
Alignment:
| Q |
42 |
aaccttaacaaagagtttcatgccaaa---tgtgcaatgtccaggaatagcacatatgaagtaatgtgttcccgcttctttgaggggaatggttgtggca |
138 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||||| |||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||| |
|
|
| T |
45703282 |
aaccttaacagagagtttcatgccaccacttatgcaatgtacaggaacagcacatatgaagtaatgagttcctgcttttttgaggggaatggttgtggca |
45703183 |
T |
|
| Q |
139 |
ccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
238 |
Q |
| |
|
||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45703182 |
ccactaccgtctgtactaattgaatttctagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
45703083 |
T |
|
| Q |
239 |
ctgtc--aataataaagtta |
256 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
45703082 |
ctgtcataataataaagtta |
45703063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 45650283 - 45650508
Alignment:
| Q |
16 |
gcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgttcccgctt |
115 |
Q |
| |
|
||||||| |||| |||||||| |||||| |||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
45650283 |
gcagaagaagcactagaagaagccttaactttaacagaaagtttcatgccacctgtgcaatgtccaggaacagcacatatgaagtaatgtgttcctgctt |
45650382 |
T |
|
| Q |
116 |
ctttgaggggaatggttgtggcaccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtg |
215 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
45650383 |
tcttgaggggaatggttgtgggaccactgctgtcagtactaattgaatttccagttgtgcatgatttatagtcactttctttaacttcatccactgtgtg |
45650482 |
T |
|
| Q |
216 |
ccacccagcttcatagttgaacactgtca |
244 |
Q |
| |
|
||||||| |||||||||| ||||||| |
|
|
| T |
45650483 |
---cccagctccatagttgaatactgtca |
45650508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 45887094 - 45886889
Alignment:
| Q |
42 |
aaccttaacaaagagtttcatgccaaa---tgtgcaatgtccaggaatagcacatatgaagtaatgtgttcccgcttctttgaggggaatggttgtggca |
138 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||||| |||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||| |
|
|
| T |
45887094 |
aaccttaacagagagtttcatgccaccacttatgcaatgtacaggaacagcacatatgaagtaatgagttcctgcttttttgaggggaatggttgtggca |
45886995 |
T |
|
| Q |
139 |
ccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
238 |
Q |
| |
|
||||| | ||| |||||||||||||||| |||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45886994 |
ccactaccgtctgtactaattgaatttctagttgtgcatgaattatagtcactttcattaacttcatccactgtgtgccacccagcttcatagttgaaca |
45886895 |
T |
|
| Q |
239 |
ctgtca |
244 |
Q |
| |
|
|||||| |
|
|
| T |
45886894 |
ctgtca |
45886889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 30054756 - 30054843
Alignment:
| Q |
130 |
gttgtggcaccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgcc |
217 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||| ||| ||||||||| |||||||||||| |||||| |||||||||||||| |
|
|
| T |
30054756 |
gttgtggcaccgctactgtctgtactaattgaatttctggttatgcatgatttatagtcactttctttaacttaatccactgtgtgcc |
30054843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University