View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_16 (Length: 437)
Name: NF10233A_low_16
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 3376561 - 3376962
Alignment:
| Q |
19 |
acatcatccacctcaaaataaaggagatagttatcatgttgtagcattgacatcaacaacattaggttctttggaacttgtatctcatagtcaaggcaat |
118 |
Q |
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| T |
3376561 |
acatcatccacctcaaaataaaggagatagttatcatgttgtagcattgacatcaacaacattaggttctttggaacttgtatctcatagtcaaggcaat |
3376660 |
T |
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| Q |
119 |
ggttttgttccatattcgactttgctcaaagcagacaatacctcagaaaacggattcgaggttggaaaaggtttcatgttttccaatggtaaggttagtg |
218 |
Q |
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| T |
3376661 |
ggttttgttccatattcgactttgctcaaagcaaacaatacctcagaaaacggattcgaggttggaaaaggtttcatgttttccaatggtaaggttagtg |
3376760 |
T |
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| Q |
219 |
agaatttcaaagaagaggttgaaaatgaggtgaagacatggtctaatatgatcgaggagaagttaccaaaatctattgccaagaattcaatcacaacacc |
318 |
Q |
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| T |
3376761 |
agaatttcaaagaagaggttgaaaatgaggtgaagacatggtctaatatgatcgaggagaagttaccaaaatctattgccaagaattcaatcacaacacc |
3376860 |
T |
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| Q |
319 |
accttgtgaggacatcatcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttgtcttttgat |
418 |
Q |
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| T |
3376861 |
accttgtgaggacatcatcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttctcttttgat |
3376960 |
T |
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| Q |
419 |
gt |
420 |
Q |
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| T |
3376961 |
gt |
3376962 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 421
Target Start/End: Original strand, 2372397 - 2372483
Alignment:
| Q |
335 |
atcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttgtcttttgatgtc |
421 |
Q |
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||||||||||||||| |||||||||| |||||||||| |||||||||| ||| || ||||| || | ||| || |||||||||||| |
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| T |
2372397 |
atcaacacatgggaattaatggaaggtcttgaagatattagtccttttcgatcgccgaatcacttcaaaagcttttcttttgatgtc |
2372483 |
T |
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