View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_163 (Length: 262)
Name: NF10233A_low_163
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_163 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 253
Target Start/End: Complemental strand, 43953856 - 43953610
Alignment:
| Q |
7 |
agcctcactgttggagacatctttgctagtctccttgcctttttgccaacagcatgggcaattataatggtacttgtttattaaccaccaccttttgttg |
106 |
Q |
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| T |
43953856 |
agcctcactgttggagacatctttgctagtctccttgcctttttgccaacagcatgggcaattataatggtacttgtttattaaccaccaccttttgttg |
43953757 |
T |
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| Q |
107 |
gatagatatgtctcattggatccatccgaatatgctcttgtttgtgtccaacacaatttgacttaagttagtccgtccatgaatttctcttggcccttgt |
206 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43953756 |
gatagatatgtctcattggatccatccgaatatgcacttgtttgtgtccaacacaatttgacttaagttagtccgtccatgaatttctcttggcacttgt |
43953657 |
T |
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| Q |
207 |
ttagtagccgctgccattaaaccacactcaggcttgaccatattctt |
253 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
43953656 |
ttagtagccgccgccattaaaccacattcaggcttgaccatattctt |
43953610 |
T |
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