View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_164 (Length: 261)
Name: NF10233A_low_164
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_164 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 6306693 - 6306842
Alignment:
| Q |
12 |
gaacacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattag |
111 |
Q |
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| T |
6306693 |
gaacacatgacataattaataagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgccgtcggtgaaagaaggatttgaattag |
6306792 |
T |
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| Q |
112 |
ctacggattcttccggtcgagaagtgatactgaatgagtttgcttcggtt |
161 |
Q |
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| T |
6306793 |
cgacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggtt |
6306842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 39538896 - 39539039
Alignment:
| Q |
14 |
acacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagct |
113 |
Q |
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| T |
39538896 |
acacatgacgtaattaacaagaagctaaacccaggtgaaaggatcgatgtgaatatctttggtggcaacgccgtcggtgaaagaaggatttgaattagcg |
39538995 |
T |
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| Q |
114 |
acggattcttccggtcgagaagtgatactgaatgagtttgcttc |
157 |
Q |
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| T |
39538996 |
acggattcttcgggtggagaagtgataccgaatgagtttgcttc |
39539039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 20627 - 20773
Alignment:
| Q |
12 |
gaacacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattag |
111 |
Q |
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| T |
20627 |
gaacacatgacataattaacaagaagctaaatccaagcgaaaggatcgatgtgaatatctttggtggcgatgctgtcggtgaaagaaggatttgaattag |
20726 |
T |
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| Q |
112 |
ctacggattcttccggtcgagaagtgatactgaatgagtttgcttcg |
158 |
Q |
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| T |
20727 |
cgacggattcttcgggtggagaagtgataccgaatgagtttgcttcg |
20773 |
T |
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Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 33809090 - 33809225
Alignment:
| Q |
23 |
ataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagctacggattct |
122 |
Q |
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| T |
33809090 |
ataattaacaagaagctaaacccaggtcaaaggatcgatgtgaatatcttttgtggcgacgccgtcggtgaaagaaggatttgaattagcgacgcattca |
33809189 |
T |
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| Q |
123 |
tccggtcgagaagtgatactgaatgagtttgcttcg |
158 |
Q |
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| T |
33809190 |
tcgggtcgagaagtgataccgaatgagtttgcttcg |
33809225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 44257488 - 44257456
Alignment:
| Q |
12 |
gaacacatgacataattaacaagaagctaaacc |
44 |
Q |
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| T |
44257488 |
gaacacatgacataattaataagaagctaaacc |
44257456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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