View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_170 (Length: 259)

Name: NF10233A_low_170
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_170
NF10233A_low_170
[»] chr7 (9 HSPs)
chr7 (1-257)||(5182134-5182390)
chr7 (202-257)||(3772584-3772639)
chr7 (195-255)||(15893848-15893908)
chr7 (202-257)||(11745815-11745871)
chr7 (180-257)||(27736856-27736934)
chr7 (185-257)||(9145922-9145995)
chr7 (188-224)||(11766414-11766450)
chr7 (167-223)||(13784880-13784936)
chr7 (167-223)||(23902775-23902831)
[»] chr3 (13 HSPs)
chr3 (1-257)||(29429906-29430159)
chr3 (201-257)||(35419376-35419433)
chr3 (201-257)||(1489652-1489709)
chr3 (201-257)||(35420346-35420403)
chr3 (180-257)||(22476053-22476131)
chr3 (180-257)||(55296505-55296583)
chr3 (201-257)||(1488683-1488740)
chr3 (185-257)||(25080802-25080875)
chr3 (181-257)||(25081530-25081607)
chr3 (172-231)||(36501611-36501670)
chr3 (202-257)||(36502390-36502445)
chr3 (167-257)||(35653803-35653893)
chr3 (185-257)||(35653104-35653176)
[»] chr5 (8 HSPs)
chr5 (1-257)||(1897463-1897718)
chr5 (11-231)||(16914111-16914337)
chr5 (176-249)||(39933556-39933629)
chr5 (202-257)||(22967192-22967247)
chr5 (167-257)||(40269650-40269740)
chr5 (180-257)||(12420904-12420982)
chr5 (180-257)||(12590066-12590144)
chr5 (186-254)||(14099233-14099303)
[»] chr4 (4 HSPs)
chr4 (38-257)||(6050592-6050815)
chr4 (186-257)||(33352099-33352171)
chr4 (180-257)||(35713908-35713986)
chr4 (167-256)||(6353638-6353727)
[»] chr1 (12 HSPs)
chr1 (185-257)||(36681514-36681587)
chr1 (167-246)||(23347000-23347079)
chr1 (167-257)||(3928280-3928370)
chr1 (201-257)||(36682270-36682327)
chr1 (167-245)||(15248871-15248949)
chr1 (180-257)||(50559115-50559193)
chr1 (175-225)||(51184533-51184583)
chr1 (228-257)||(9150915-9150944)
chr1 (180-256)||(19402241-19402318)
chr1 (201-257)||(51097501-51097558)
chr1 (185-257)||(51967522-51967595)
chr1 (202-257)||(17174298-17174354)
[»] chr2 (6 HSPs)
chr2 (202-257)||(44944083-44944138)
chr2 (167-257)||(3769320-3769410)
chr2 (192-223)||(37488113-37488144)
chr2 (195-257)||(11682049-11682111)
chr2 (209-257)||(30785643-30785692)
chr2 (201-257)||(38115440-38115497)
[»] chr8 (3 HSPs)
chr8 (186-251)||(37550931-37550997)
chr8 (172-257)||(39921753-39921839)
chr8 (180-257)||(41975577-41975655)
[»] chr6 (2 HSPs)
chr6 (167-249)||(30373065-30373147)
chr6 (180-257)||(25531561-25531639)
[»] scaffold0045 (1 HSPs)
scaffold0045 (180-221)||(14819-14860)
[»] scaffold0025 (1 HSPs)
scaffold0025 (167-223)||(150368-150424)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 5182390 - 5182134
Alignment:
Q  1 ttctattgaatttctcaagaatttttccccaaagcttaattccatggatgtagaacctccactttgagttgtgacgtgatgaggaaggagaactaggagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5182390 ttctattgaatttctcaagaatttttccccaaagcttaattccatggatgtagaacctccactttgagttgtgacgtgatgaggaaggagaactaggagc 5182291  T
Q  101 actagaaataagagaagtggggaaagattcagaaatatgagaccacgtgttcccaaatgtcatattaaccattaagattgatctaatggttataatttag 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5182290 actagaaataagagaagtggagaaagattcagaaatatgagaccgcgtgttcccaaatgtcatattaaccattaagattgatctaatggttataatttag 5182191  T
Q  201 tcctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatatat 257  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  5182190 tcctctcacctcttacaataaaaactctctcatttgatatgtcctctctatatatat 5182134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 3772639 - 3772584
Alignment:
Q  202 cctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatatat 257  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  3772639 cctctcatctctcacaataaaaaacctctcatttgatatgccctctatatatatat 3772584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 15893908 - 15893848
Alignment:
Q  195 atttagtcctctcatctctcacaataaaaactc-tctcatttgatatgtcctctatatatat 255  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||    
T  15893908 atttaatcctctcatctctcacaat-aaaactcatctcatttgatatgtcctgtatatatat 15893848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 11745815 - 11745871
Alignment:
Q  202 cctctcatctctcacaataaaaactc-tctcatttgatatgtcctctatatatatat 257  Q
    ||||||| |||||||||||||||||| ||||| |||||||| ||| |||||||||||    
T  11745815 cctctcacctctcacaataaaaactcatctcacttgatatgacctatatatatatat 11745871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 27736934 - 27736856
Alignment:
Q  180 gatctaatggttataatttagtcctctcatctctcacaataaaaac-tctctcatttgatatgtcctctatatatatat 257  Q
    |||| ||||||||| ||| |||| |||||||||||| |||||  || |||||||||||| ||| ||| |||||||||||    
T  27736934 gatccaatggttattattaagtcatctcatctctcataataaccacttctctcatttgaaatgccctatatatatatat 27736856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 9145922 - 9145995
Alignment:
Q  185 aatggttataatttagtcctctcatctctcacaataaaaactc-tctcatttgatatgtcctctatatatatat 257  Q
    ||||||||| ||| ||||||||||||||||| |||||  |||| |||||||||| ||| | | |||||||||||    
T  9145922 aatggttattattaagtcctctcatctctcataataaccactcatctcatttgaaatgccatatatatatatat 9145995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 11766450 - 11766414
Alignment:
Q  188 ggttataatttagtcctctcatctctcacaataaaaa 224  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  11766450 ggttatattttagtcctctcacctctcacaataaaaa 11766414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 13784880 - 13784936
Alignment:
Q  167 aaccattaagattgatctaatggttataatttagtcctctcatctctcacaataaaa 223  Q
    |||| |||| ||||||| || ||||||  |||| |||||||||||||||||||||||    
T  13784880 aaccgttaaaattgatccaaaggttatggtttaatcctctcatctctcacaataaaa 13784936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 23902831 - 23902775
Alignment:
Q  167 aaccattaagattgatctaatggttataatttagtcctctcatctctcacaataaaa 223  Q
    |||| |||| ||||||| || ||||||  |||| |||||||||||||||||||||||    
T  23902831 aaccgttaaaattgatccaaaggttatggtttaatcctctcatctctcacaataaaa 23902775  T

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Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 29430159 - 29429906
Alignment:
Q  1 ttctattgaatttctcaagaatttttccccaaagcttaattccatggatgtagaacctccactttgagttgtgacgtgatgaggaaggagaactaggagc 100  Q
    |||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  29430159 ttctatggaatttctcaagaattattccccaaaacttaatttcatggatgtagaacctccactttgagttgtgacgtga---ggaaggagaactaggagc 29430063  T
Q  101 actagaaataagagaagtggggaaagattcagaaatatgagaccacgtgttcccaaatgtcatattaaccattaagattgatctaatggttataatttag 200  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  29430062 actggaaataagagaagtggagaaagattcagaaatatgagaccactagttcccaaatgtcatatgaaccattaagattgatctaatggttatagtttag 29429963  T
Q  201 tcctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatatat 257  Q
    |||||||| |||||||||||||||| ||||||||||||||||||  |||||||||||    
T  29429962 tcctctcacctctcacaataaaaaccctctcatttgatatgtcccatatatatatat 29429906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 35419433 - 35419376
Alignment:
Q  201 tcctctcatctctcacaataaaaa-ctctctcatttgatatgtcctctatatatatat 257  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  35419433 tcctctcatctctcacaataaaaagccctctcacttgatatgtcctctatatatatat 35419376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 1489652 - 1489709
Alignment:
Q  201 tcctctcatctctcacaataaaaa-ctctctcatttgatatgtcctctatatatatat 257  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||| |||||||||    
T  1489652 tcctctcatctctcacaataaaaagccctctcatttgatatgccctctctatatatat 1489709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 35420346 - 35420403
Alignment:
Q  201 tcctctcatctctcacaataaaaa-ctctctcatttgatatgtcctctatatatatat 257  Q
    |||||||||||||||||||||||| | |||||| |||||||| |||||||||||||||    
T  35420346 tcctctcatctctcacaataaaaagccctctcacttgatatgccctctatatatatat 35420403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 22476053 - 22476131
Alignment:
Q  180 gatctaatggttataatttagtcctctcatctctcacaataaaaact-ctctcatttgatatgtcctctatatatatat 257  Q
    |||| ||||||||| ||| ||||||||||||||||| |||||  ||| ||||||||||| ||||| | |||||||||||    
T  22476053 gatccaatggttattattaagtcctctcatctctcataataatcactcctctcatttgaaatgtcatatatatatatat 22476131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 55296583 - 55296505
Alignment:
Q  180 gatctaatggttataatttagtcctctcatctctcacaataaaaactc-tctcatttgatatgtcctctatatatatat 257  Q
    |||| ||||||||| ||| |||| |||||||||||| |||||  |||| |||||||||||||| ||| |||||||||||    
T  55296583 gatccaatggttattattaagtcatctcatctctcataataaccactcctctcatttgatatgccctatatatatatat 55296505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 1488740 - 1488683
Alignment:
Q  201 tcctctcatctctcacaataaaaa-ctctctcatttgatatgtcctctatatatatat 257  Q
    |||||||||||||||||||||||| | |||||| |||||||||| | |||||||||||    
T  1488740 tcctctcatctctcacaataaaaagccctctcacttgatatgtcttttatatatatat 1488683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 25080875 - 25080802
Alignment:
Q  185 aatggttataatttagtcctctcatctctcacaataaaaact-ctctcatttgatatgtcctctatatatatat 257  Q
    ||||||||||| | | |||||||||||||||| |||| |||| |||||| |||||||| ||||||| |||||||    
T  25080875 aatggttataaatcaatcctctcatctctcactataacaactcctctcacttgatatgccctctatgtatatat 25080802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 25081530 - 25081607
Alignment:
Q  181 atctaatggttataatttagtcctctcatctctcacaataaaaact-ctctcatttgatatgtcctctatatatatat 257  Q
    |||| |||||||||| | | |||||||||||||||| |||| |||| |||||| |||||||| ||| |||||||||||    
T  25081530 atctgatggttataaatcaatcctctcatctctcactataacaactcctctcacttgatatgccctatatatatatat 25081607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 36501611 - 36501670
Alignment:
Q  172 ttaagattgatctaatggttataatttagtcctctcatctctcacaataaaaactctctc 231  Q
    |||||||||||| || |||| | | ||| ||||||||||||||||||||||||| |||||    
T  36501611 ttaagattgatccaagggttgtgacttaatcctctcatctctcacaataaaaaccctctc 36501670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 36502390 - 36502445
Alignment:
Q  202 cctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatatat 257  Q
    ||||||||||||||||||||||   |||||| |||||||| ||| |||||||||||    
T  36502390 cctctcatctctcacaataaaactcctctcacttgatatgccctatatatatatat 36502445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 35653803 - 35653893
Alignment:
Q  167 aaccattaagattgatctaatggttataatttagtcctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatatat 257  Q
    |||| |||||||| ||| ||||||||  ||| |  ||||||||||||||||||||||   |||||| ||||||   |||||||||||||||    
T  35653803 aaccgttaagattaatcaaatggttaggattcaaccctctcatctctcacaataaaactcctctcacttgatacaccctctatatatatat 35653893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 35653176 - 35653104
Alignment:
Q  185 aatggttataatttagtcctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatatat 257  Q
    ||||||||  |||||  ||||||||||||||||||||||   |||||| ||||||   |||||||||||||||    
T  35653176 aatggttaggatttaaccctctcatctctcacaataaaactcctctcacttgatacaccctctatatatatat 35653104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 1897463 - 1897718
Alignment:
Q  1 ttctattgaatttctcaagaatttttccccaaagcttaattccatggatgtagaacctccactttgagttgtgacgtgatgaggaaggagaactaggagc 100  Q
    |||||||||||||||||| |||||  |||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1897463 ttctattgaatttctcaaaaattt--ccccaaagcttaattttatggatgtagaacctccactttgagttatgacgtgatgaggaaggagaactaggagc 1897560  T
Q  101 actagaaataagagaagtggggaaagattcagaaatatgagaccacgtgttcccaaatgtcatattaaccattaagattgatctaatggttataatttag 200  Q
    ||  |||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1897561 accggaaataagagaagtggagaaagattcagaaatatgagaccatgggttcccaaatgtcatatcaaccattaagattgatctaatggttataatttag 1897660  T
Q  201 tcctctcatctctcacaataaaaactctctcatttgatatgtcctc-tatatatatat 257  Q
    |||||||| |||| ||||||||||| ||||||||| |||||||||| |||||||||||    
T  1897661 tcctctcacctcttacaataaaaaccctctcatttaatatgtcctcatatatatatat 1897718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 16914111 - 16914337
Alignment:
Q  11 tttctcaagaatttttccccaaagcttaattccatggatgtagaacctccactttgagttgtgacgtgatgaggaaggagaactag-------gagcact 103  Q
    ||||| ||||||| ||||| |||| |||||| |||| |||||||||||||||| |||||||||| |||| || | || ||||||||       ||| |||    
T  16914111 tttctaaagaattcttccctaaagtttaatttcatgaatgtagaacctccactgtgagttgtgatgtgaggaaggag-agaactagaataaaggagaact 16914209  T
Q  104 agaaataagagaagtggggaaagattcagaaatatgagaccacgtgttcccaaatgtcatattaaccattaagattgatctaatggttataatttagtcc 203  Q
     ||||||| | |||||| | | ||||||  ||| | ||| ||||||    |||||||||||| |||| ||||||||||||||||||||||||| ||   |    
T  16914210 ggaaataataaaagtggaggacgattcaagaatgtaagatcacgtgcatacaaatgtcatatgaacctttaagattgatctaatggttataatataactc 16914309  T
Q  204 tctcatctctcacaataaaaactctctc 231  Q
    |||||||||||||||||||||| |||||    
T  16914310 tctcatctctcacaataaaaaccctctc 16914337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 39933556 - 39933629
Alignment:
Q  176 gattgatctaatggttataatttagtcctctcatctctcacaataaaaactctctcatttgatatgtcctctat 249  Q
    |||||||| || |||||| |||||  ||||| |||||||||||||||||| ||||||||| ||||| |||||||    
T  39933556 gattgatccaagggttatgatttaaccctcttatctctcacaataaaaacactctcatttaatatgccctctat 39933629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 22967192 - 22967247
Alignment:
Q  202 cctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatatat 257  Q
    |||||||||||||||||||||||  |||||| |||||||| ||| |||||||||||    
T  22967192 cctctcatctctcacaataaaaaacctctcacttgatatgccctatatatatatat 22967247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 40269650 - 40269740
Alignment:
Q  167 aaccattaagattgatctaatggttataatttagtcctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatatat 257  Q
    ||||||||| ||| ||| ||||||||||||| |  |||||||||||||  ||||| |   ||||||||||||||||| | |||||||||||    
T  40269650 aaccattaacattcatccaatggttataattaaaccctctcatctctcgtaataagactcctctcatttgatatgtcatatatatatatat 40269740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 12420982 - 12420904
Alignment:
Q  180 gatctaatggttataatttagtcctctcatctctcacaataaaaact-ctctcatttgatatgtcctctatatatatat 257  Q
    |||| ||||||||| ||| ||||||||||||||||| |||||  ||| ||||||||||| ||| | | |||||||||||    
T  12420982 gatccaatggttattattaagtcctctcatctctcataataaccactcctctcatttgaaatgccatatatatatatat 12420904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 12590144 - 12590066
Alignment:
Q  180 gatctaatggttataatttagtcctctcatctctcacaataaaaact-ctctcatttgatatgtcctctatatatatat 257  Q
    |||| ||||||||| ||| ||||||||||||||||| |||||  ||| ||||||||||| ||| | | |||||||||||    
T  12590144 gatccaatggttattattaagtcctctcatctctcataataatcactcctctcatttgaaatgccatatatatatatat 12590066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 14099233 - 14099303
Alignment:
Q  186 atggttataatttagtcctctca-tctctcacaataaaaactc-tctcatttgatatgtcctctatatata 254  Q
    |||||||| | ||| |||||||| |||||||||||||| |||| ||||| ||||||||| |||||||||||    
T  14099233 atggttattaattattcctctcactctctcacaataaatactcctctcacttgatatgttctctatatata 14099303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 6050592 - 6050815
Alignment:
Q  38 aattccatggatgtagaacc-tccactttgagttgtgacgtgatgaggaaggagaactagga----gcactagaaataagagaagtggggaaagattcag 132  Q
    |||| ||||||||||||||| ||||||||||||||||| |||| || | || |||||| | |    | ||| |||||| ||||||||| | | |||||||    
T  6050592 aatttcatggatgtagaaccctccactttgagttgtgatgtgaggaaggag-agaactggaatacagaactggaaatatgagaagtggaggacgattcag 6050690  T
Q  133 aaatatgagaccacgtgttcccaaatgtcatattaaccattaagattgatctaatggttataatttagtcctctcatctctcacaataaaaactctctca 232  Q
     | | ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||  ||||||    
T  6050691 tagtgtgagaccacgtgttcacaaatgtcatatgaaccattaagattgatctaatggttataatttagtcctctcatctcttaccataaaaatcctctca 6050790  T
Q  233 tttgatatgtcctctatatatatat 257  Q
    |||||||||||||||||||||||||    
T  6050791 tttgatatgtcctctatatatatat 6050815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 33352099 - 33352171
Alignment:
Q  186 atggttataatttagtcctctcatctctcacaataaaaactc-tctcatttgatatgtcctctatatatatat 257  Q
    |||||||| | ||| |||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||    
T  33352099 atggttattaattactcctctcatctctcactataacaactcatctcacttgatatgtcctctatatatatat 33352171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 35713986 - 35713908
Alignment:
Q  180 gatctaatggttataatttagtcctctcatctctcacaataaaaact-ctctcatttgatatgtcctctatatatatat 257  Q
    |||| ||||||||| ||| ||||||||||||||||| |||||  ||| ||||||||||| ||| | | |||||||||||    
T  35713986 gatccaatggttattattaagtcctctcatctctcataataatcactcctctcatttgaaatgccatatatatatatat 35713908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 6353727 - 6353638
Alignment:
Q  167 aaccattaagattgatctaatggttataatttagtcctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatata 256  Q
    |||| |||||||||||| || |||||||| |||   ||||||||||||| ||| ||||| |||||| |||| ||| | | ||||||||||    
T  6353727 aaccgttaagattgatccaagggttataacttaacactctcatctctcataatgaaaaccctctcacttgaaatgccatatatatatata 6353638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 36681587 - 36681514
Alignment:
Q  185 aatggttataatttagtcctctcatctctcacaataaaaactc-tctcatttgatatgtcctctatatatatat 257  Q
    ||||||||| | ||| |||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||    
T  36681587 aatggttattaattactcctctcatctctcactataacaactcctctcacttgatatgtcctctatatatatat 36681514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 23347079 - 23347000
Alignment:
Q  167 aaccattaagattgatctaatggttataatttagtcctctcatctctcacaataaaaactctctcatttgatatgtcctc 246  Q
    |||| |||| ||||||  || ||||||||||||  |||||||||||| | |||||||| ||||||| |||||||||||||    
T  23347079 aaccgttaatattgattcaagggttataatttaaccctctcatctcttataataaaaaatctctcacttgatatgtcctc 23347000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 3928370 - 3928280
Alignment:
Q  167 aaccattaagattgatctaatggttataatttagtcctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatatat 257  Q
    |||| |||||||||||| || |||| ||| |||   ||||||||||||||||||||||| |||| | |||| ||| ||| |||||||||||    
T  3928370 aaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctcttacttgaaatgccctatatatatatat 3928280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 36682270 - 36682327
Alignment:
Q  201 tcctctcatctctcacaataaaaactc-tctcatttgatatgtcctctatatatatat 257  Q
    |||||||||||||||| |||| ||||| |||||||||||||| ||| |||||||||||    
T  36682270 tcctctcatctctcactataacaactcctctcatttgatatgccctatatatatatat 36682327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 15248949 - 15248871
Alignment:
Q  167 aaccattaagattgatctaatggttataatttagtcctctcatctctcacaataaaaactctctcatttgatatgtcct 245  Q
    ||||||||| ||| ||| || |||||| |||||  |||||||||||||||  ||||| | |||||| ||||||||||||    
T  15248949 aaccattaatattaatccaagggttatgatttaaccctctcatctctcactgtaaaagccctctcacttgatatgtcct 15248871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 50559115 - 50559193
Alignment:
Q  180 gatctaatggttataatttagtcctctcatctctcacaataaaaact-ctctcatttgatatgtcctctatatatatat 257  Q
    |||| ||||||||| ||| ||| ||||||||||||| |||||  ||| ||||||||||| ||||| | |||||||||||    
T  50559115 gatccaatggttattattaagttctctcatctctcataataaccactcctctcatttgaaatgtcatatatatatatat 50559193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 51184583 - 51184533
Alignment:
Q  175 agattgatctaatggttataatttagtcctctcatctctcacaataaaaac 225  Q
    |||| |||| || ||||||||||||  ||||||||||||||||||||||||    
T  51184583 agatcgatccaaaggttataatttaaccctctcatctctcacaataaaaac 51184533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 9150944 - 9150915
Alignment:
Q  228 tctcatttgatatgtcctctatatatatat 257  Q
    ||||||||||||||||||||||||||||||    
T  9150944 tctcatttgatatgtcctctatatatatat 9150915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 19402241 - 19402318
Alignment:
Q  180 gatctaatggttataatttagtcctctcatctctcacaataaaaactc-tctcatttgatatgtcctctatatatata 256  Q
    |||| ||||||||| ||| |||||||||| |||||| |||||  |||| |||||||||| ||| ||| ||||||||||    
T  19402241 gatccaatggttattattaagtcctctcacctctcataataaccactcctctcatttgaaatggcctatatatatata 19402318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 51097558 - 51097501
Alignment:
Q  201 tcctctcatctctcacaataaaaactc-tctcatttgatatgtcctctatatatatat 257  Q
    |||||||||||||||  ||||  |||| ||||| ||||||||||||||||||||||||    
T  51097558 tcctctcatctctcattataactactcctctcacttgatatgtcctctatatatatat 51097501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 51967595 - 51967522
Alignment:
Q  185 aatggttataatttagtcctctcatctctcacaataaaaactc-tctcatttgatatgtcctctatatatatat 257  Q
    ||||||||| ||| ||||||||||||||||| |||||  |||| |||||||||| ||| | | |||||||||||    
T  51967595 aatggttattattaagtcctctcatctctcataataatcactcatctcatttgaaatgccatatatatatatat 51967522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 17174298 - 17174354
Alignment:
Q  202 cctctcatctctcacaataaaaa-ctctctcatttgatatgtcctctatatatatat 257  Q
    ||||||| ||||||||||||||| |||| ||| |||||||| || ||||||||||||    
T  17174298 cctctcacctctcacaataaaaagctctatcacttgatatgccccctatatatatat 17174354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 44944083 - 44944138
Alignment:
Q  202 cctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatatat 257  Q
    |||||||||||||||||||||||   ||||| |||||||| |||||||||||||||    
T  44944083 cctctcatctctcacaataaaaaacatctcacttgatatgccctctatatatatat 44944138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 3769320 - 3769410
Alignment:
Q  167 aaccattaagattgatctaatggttataatttagtcctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatatat 257  Q
    |||| |||||||||||| || |||| ||| |||   ||||||||||||||||||||||| |||||| |||| ||| | | |||||||||||    
T  3769320 aaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttgaaatgccatatatatatatat 3769410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 37488144 - 37488113
Alignment:
Q  192 ataatttagtcctctcatctctcacaataaaa 223  Q
    ||||||||||||||||||||||||||||||||    
T  37488144 ataatttagtcctctcatctctcacaataaaa 37488113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 11682111 - 11682049
Alignment:
Q  195 atttagtcctctcatctctcacaataaaaactctctcatttgatatgtcctctatatatatat 257  Q
    ||||| |||||||| |||||| ||||||||| |||||| ||||||   |||||||||||||||    
T  11682111 atttactcctctcacctctcataataaaaacactctcacttgatacaccctctatatatatat 11682049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 30785643 - 30785692
Alignment:
Q  209 tctctcacaataaaaactc-tctcatttgatatgtcctctatatatatat 257  Q
    |||||||||||||| |||| ||||| |||||||||||| |||||||||||    
T  30785643 tctctcacaataaatactcctctcacttgatatgtcctatatatatatat 30785692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 38115440 - 38115497
Alignment:
Q  201 tcctctcatctctcacaataaaaa-ctctctcatttgatatgtcctctatatatatat 257  Q
    |||||||| ||||||||||||||| | |||||| |||||||| ||| |||||||||||    
T  38115440 tcctctcacctctcacaataaaaaaccctctcacttgatatgccctatatatatatat 38115497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 37550931 - 37550997
Alignment:
Q  186 atggttataatttagtcctctcatctctcacaataaaaact-ctctcatttgatatgtcctctatat 251  Q
    |||||||| | ||| |||||||||||||||| |||| |||| |||||| ||||||||||||||||||    
T  37550931 atggttattaattactcctctcatctctcactataacaactcctctcacttgatatgtcctctatat 37550997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 39921753 - 39921839
Alignment:
Q  172 ttaagattgatctaatggttataatttagtcctctcatctctcacaataaaaactctctcatttgatatgtcct-ctatatatatat 257  Q
    |||| ||| |||||| ||| ||||||||||||||||||||||| ||||||||   |||| |||||||||| |||  |||||||||||    
T  39921753 ttaatattaatctaaaggtcataatttagtcctctcatctctcgcaataaaagtcctcttatttgatatgccctaatatatatatat 39921839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 41975577 - 41975655
Alignment:
Q  180 gatctaatggttataatttagtcctctcatctctcacaataaaaactc-tctcatttgatatgtcctctatatatatat 257  Q
    |||| ||||||||| ||| ||||||||||||||||| |||||  |||| |||||||||| ||| ||| |||||||||||    
T  41975577 gatccaatggttattattaagtcctctcatctctcataataaccactcatctcatttgaaatgccctatatatatatat 41975655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 30373065 - 30373147
Alignment:
Q  167 aaccattaagattgatctaatggttataatttagtcctctcatctctcacaataaaaactctctcatttgatatgtcctctat 249  Q
    |||| |||||||||||| || |||| |||||||   ||||||||||||| ||||||||| |||||| |||| ||| |||||||    
T  30373065 aaccgttaagattgatccaagggttgtaatttaacactctcatctctcataataaaaaccctctcacttgaaatgccctctat 30373147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 25531561 - 25531639
Alignment:
Q  180 gatctaatggttataatttagtcctctcatctctcacaataaaaact-ctctcatttgatatgtcctctatatatatat 257  Q
    |||| ||||||||| ||| |||| |||||||||||| |||||  ||| ||||||||||| ||| ||| |||||||||||    
T  25531561 gatccaatggttattattaagtcttctcatctctcataataaccactcctctcatttgaaatgccctatatatatatat 25531639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 14860 - 14819
Alignment:
Q  180 gatctaatggttataatttagtcctctcatctctcacaataa 221  Q
    |||||||||||||| ||| ||||||||||||||||| |||||    
T  14860 gatctaatggttattattaagtcctctcatctctcataataa 14819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 150424 - 150368
Alignment:
Q  167 aaccattaagattgatctaatggttataatttagtcctctcatctctcacaataaaa 223  Q
    |||| |||||||||||| || ||||||  ||||  ||||||||||||||||||||||    
T  150424 aaccgttaagattgatcgaagggttatggtttaaccctctcatctctcacaataaaa 150368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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