View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_177 (Length: 254)
Name: NF10233A_low_177
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_177 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 16569645 - 16569398
Alignment:
| Q |
1 |
tactatttacgctaatgtaaactaatttctgtgttttttctcgcttatccgtgctttgtctccactagttatatagtcttctttgtttccctcatcaatt |
100 |
Q |
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| T |
16569645 |
tactatttacgctaatgtaaactaatttctgtgttttttctcgcttatccgtgctttgtctcaaatagttataaagtcttctttgtttccctcatcaatt |
16569546 |
T |
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| Q |
101 |
atagttgtttacactatctgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagcagtaaaga |
200 |
Q |
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| T |
16569545 |
atagatgtttacactatctgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcggaagctttagaaaatggaagcagtaaaga |
16569446 |
T |
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| Q |
201 |
aagaacagtccaaaagaatgaaaacctcttcatgaattggcctttaat |
248 |
Q |
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| T |
16569445 |
aagaacagtccaaaagaatgaaaacctcttcatgaattggcctttaat |
16569398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 16528127 - 16527899
Alignment:
| Q |
20 |
aactaatttctgtgttttttctcgcttatccgtgctttgtctccactagttatatagtcttctttgtttccctcatcaattatagttgtttacactatct |
119 |
Q |
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| T |
16528127 |
aactaatttctgtgttttttctatcttatccgtgctttgtctccactgttcatataatcgtctctgtttccctcatcaattatagttgtgtacactatct |
16528028 |
T |
|
| Q |
120 |
gcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagcagtaaagaaagaacagtccaaaagaat |
219 |
Q |
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| T |
16528027 |
gcaggaaacacttcacaatcacaatggtaacaaagagtccacagatgacgccgaagctttagaaaatggaagcaacaaagaaaagacagtccgaaagaat |
16527928 |
T |
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| Q |
220 |
gaaaacctcttcatgaattggcctttaat |
248 |
Q |
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| T |
16527927 |
gaaaacctctttatgaattggcctttaat |
16527899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 16588250 - 16588097
Alignment:
| Q |
94 |
atcaattatagttgtttacactatctgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagca |
193 |
Q |
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||||||||||||| || | |||||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||| |||||||| ||||||||||||| |
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| T |
16588250 |
atcaattatagttattaa-actatccgcaggaaacacttcacaatcacaatggtaacgaagagtccaaaggtaatgccgaagctttagaaaatggaagca |
16588152 |
T |
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| Q |
194 |
gtaaagaaagaacagtccaaaagaatgaaaacctcttcatgaattggcctttaat |
248 |
Q |
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| T |
16588151 |
gcaaagaaaagacagttcaaaagaatgaaaacctctttttgaattggcctttaat |
16588097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 242
Target Start/End: Complemental strand, 16519603 - 16519471
Alignment:
| Q |
119 |
tgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagca-----gt----aaagaaagaacagt |
209 |
Q |
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||||||||||||||||||| |||||||||||| || |||| || |||||| |||||| | ||||||||||||| || ||||||| | ||| |
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| T |
16519603 |
tgcaggaaacacttcacaagcacaatggtagcagtgagtccatagatgatgctgaagctatagaaaatggaagcaaaaaggttgacaaagaaaagatagt |
16519504 |
T |
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| Q |
210 |
ccaaaagaatgaaaacctcttcatgaattggcc |
242 |
Q |
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| T |
16519503 |
tcaaaagaatgaaaacctcttgatgaattggcc |
16519471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 9008905 - 9008958
Alignment:
| Q |
195 |
taaagaaagaacagtccaaaagaatgaaaacctcttcatgaattggcctttaat |
248 |
Q |
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|||||||| ||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
9008905 |
taaagaaaatacagtccaaaagaatgaaattctcttcaggaattggcctttaat |
9008958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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