View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_178 (Length: 254)
Name: NF10233A_low_178
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_178 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 14817225 - 14817461
Alignment:
| Q |
18 |
acatcacgcacggtctttgatgaagaagattcattatctgaatttgtggatcgatctcctgaatgaaaagctgtaatatgagaattttgttcatcttgag |
117 |
Q |
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| T |
14817225 |
acatcacgcacggtctttgatgaagaagattcattatctgaatttgtggatcgatctcctgaatgaaaagctgtaatatgagaattttgttcatcttgag |
14817324 |
T |
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| Q |
118 |
tcactggctccacacaacacagtgcaggggaaggcgaggacttggttactttatggtctaaaaaggatttatagcattccataatacaaactgattttan |
217 |
Q |
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| T |
14817325 |
tcactggctccacacaacacagtgcaggggaaggcgaggacttggttactttatggtctaaaaaggatttatagcattccataatacaaactgattttag |
14817424 |
T |
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| Q |
218 |
nnnnnnaaattccagatgtaaccaccaacgactactc |
254 |
Q |
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| T |
14817425 |
ttttttaaattccagatgtaaccaccaacgactactc |
14817461 |
T |
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