View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_179 (Length: 254)
Name: NF10233A_low_179
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_179 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 248
Target Start/End: Original strand, 8335344 - 8335588
Alignment:
| Q |
4 |
gatatagaaacatatgaaaatgaactatataaattgataatgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgact |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8335344 |
gatatagaaacatatgaaaatgaactatataaattgataatgtaccttgattggagtgttgaaatcattatcagaaatgtgtatatcaaatataatgact |
8335443 |
T |
|
| Q |
104 |
tcctctggatacatgctacgactatgaaaagaaggtattttagtagtgcaaaatacttccctgaacattataactttaaaaagattatttccatagtatc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8335444 |
tcctctggatacatgctacgactatgaaaagaaggtattttagtagcgcaaaaaacttccctgaacattataactttaaaaagattatttccatagtatc |
8335543 |
T |
|
| Q |
204 |
caaaaataatgtcaacattgtctggagaatgatgatattgttgga |
248 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8335544 |
caaaaataatgtcaacattgtctggaaaatgatgatattgttgga |
8335588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 4 - 248
Target Start/End: Complemental strand, 33550488 - 33550244
Alignment:
| Q |
4 |
gatatagaaacatatgaaaatgaactatataaattgataatgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgact |
103 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33550488 |
gatatagaaaaatatgaaaatgaactatataaattgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgact |
33550389 |
T |
|
| Q |
104 |
tcctctggatacatgctacgactatgaaaagaaggtattttagtagtgcaaaatacttccctgaacattataactttaaaaagattatttccatagtatc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33550388 |
tcctctggatacatgctacgactatgaaaagaaggtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatc |
33550289 |
T |
|
| Q |
204 |
caaaaataatgtcaacattgtctggagaatgatgatattgttgga |
248 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
33550288 |
caaaaataatgtcaacattgtttggaaaatgatgatattgttgga |
33550244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 248
Target Start/End: Complemental strand, 26230863 - 26230618
Alignment:
| Q |
4 |
gatatagaaacatatgaaaatgaactatataaattgataatgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgact |
103 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26230863 |
gatatagaaaaatatgaaaatgaactatataaattgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgact |
26230764 |
T |
|
| Q |
104 |
tcctctggatacatgctacgactatgaaaagaaggtattttagtagtgcaaaatacttccctgaacattataactttaaaaag-attatttccatagtat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
26230763 |
tcctctggatacatgctacgactatgaaaagaaggtattttagtagcgcaaaatacttccctgaacattataactttaaaaagaattatttccgtagtat |
26230664 |
T |
|
| Q |
203 |
ccaaaaataatgtcaacattgtctggagaatgatgatattgttgga |
248 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26230663 |
ccaaaaataatgtcaacattgtctggaaaatgatgatattgttgga |
26230618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 4684776 - 4684949
Alignment:
| Q |
4 |
gatatagaaacatatgaaaatgaactatataaattgataatgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgact |
103 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684776 |
gatatagaaaaatatgaaaatgaactatataaattgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgact |
4684875 |
T |
|
| Q |
104 |
tcctctggatacatgctacgactatgaaaagaaggtattttagtagtgcaaaatacttccctgaacattataac |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4684876 |
tcctctggatacatgctacgactatgaaaagaaggtattttagtagcgcaaaatacttccctgaacattataac |
4684949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 248
Target Start/End: Complemental strand, 26632775 - 26632561
Alignment:
| Q |
34 |
aaattgataatgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaa |
133 |
Q |
| |
|
|||||||||||||||| | |||||| | |||| ||||| ||| |||| | ||||||||| | | || ||| | |||||||||| | |||||||||||| |
|
|
| T |
26632775 |
aaattgataatgtaccataattggatttgttaagtcattctcataaatctagatatcaaattttaggatttcatttggatacatgatgcgactatgaaaa |
26632676 |
T |
|
| Q |
134 |
gaaggtattttagtagtgcaaaatacttccctgaacattataactttaaaaagattatttccatagtatccaaaaataatgtcaacattgtctggagaat |
233 |
Q |
| |
|
| || |||| ||| ||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || | | ||| |
|
|
| T |
26632675 |
gctggaatttcggtacatcaaaaattttctctgaacattataactttaaaaagattatttttatattatccaaaaagaatgtcaacattatcggaaaaat |
26632576 |
T |
|
| Q |
234 |
gatgatattgttgga |
248 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26632575 |
gatgatattgttgga |
26632561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University