View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_183 (Length: 251)
Name: NF10233A_low_183
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_183 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 5870652 - 5870417
Alignment:
| Q |
17 |
gaataaagatgtcactacacttgattggaatgtgagtttgatgtcatattcttatttgaatctgtgattactgatagtgacttcaaggtcctgtccagtt |
116 |
Q |
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| T |
5870652 |
gaataaagatgtcactacacttgattggaatgtgagtttgatgtcatattcttatttgaatctgtgattactgatagtgacttcaaggtcctgtccagtt |
5870553 |
T |
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| Q |
117 |
tcctgatttttctcatccttttctattttttctcacccgttggaactttcttgagcagagcaattttgttggaacatgaaatgtgt-aaggataattttg |
215 |
Q |
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| T |
5870552 |
tcctgatttttcacatccttttctattttttctcacccgttggaactttcttgagcagagcaattttgtgggaaaaagaaatgtgtaaaggataattttg |
5870453 |
T |
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| Q |
216 |
ttattattcgggagttttgtgtaggttttgaaaata |
251 |
Q |
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| T |
5870452 |
ttattattcgggagttttgtgtaggttttgaaaata |
5870417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 5855474 - 5855308
Alignment:
| Q |
19 |
ataaagatgtcactacacttgattggaatgtgagtttgatgtcatattcttatttgaatctgtgattactgatagtgacttcaaggtcctgtccagtttc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||| ||| ||||| |
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| T |
5855474 |
ataaagatgtcactacacttgattggaatgtgagtttgatggcatattcttatttgaatccatgattactgatagtgacttcaaagtcccgtctagtttt |
5855375 |
T |
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| Q |
119 |
ctgatttttctcatccttttctat-tttttctcacccgttggaactttcttgagcagagcaattttg |
184 |
Q |
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| T |
5855374 |
ttgatttttcacatccgtttctatctttttctcacctgttggagctttctcgagcagaataattttg |
5855308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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