View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_184 (Length: 251)
Name: NF10233A_low_184
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_184 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 434839 - 434605
Alignment:
| Q |
17 |
ggacatcatggatctcattttaagattaggg-ttttcgttgtcttccaatttcatggatgtcgcccagatttacaaaggtagtttttcgcgtttgcttca |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
434839 |
ggacatcatggatctcattt-aagattagggattttcgtcgtcttccaatttcatggatgtcgcccagattttcaaaggtagtttttcgcgtttgcttca |
434741 |
T |
|
| Q |
116 |
gttaattagtgtttttgttagaattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctc |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
434740 |
gttaattagtgtttttgtgagaattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctc |
434641 |
T |
|
| Q |
216 |
aattgacttcgactcattgaatacaagggattcaaa |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
434640 |
aattgacttcgactcattgaatacaagggattcaaa |
434605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 17512681 - 17512754
Alignment:
| Q |
58 |
cttccaatttcatggatgtcgcccagatttacaaaggtagtttttcgcgtttgcttcagttaattagtgttttt |
131 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
17512681 |
cttccaatttcatggatgtcgcctagattttcaaatgtagtttttcgcgtttgtttcagttagttattgttttt |
17512754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 17512780 - 17512893
Alignment:
| Q |
137 |
aattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctcaattgacttcgactcattgaa |
236 |
Q |
| |
|
|||| ||||| |||||| |||||||| || | |||||||||||||| | | |||||| |||||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
17512780 |
aattgaattcaattcatttaagattagggcttcaaattcataaattctacgattagttgtacctttgtcattgagtctcaattgattttaacttattgaa |
17512879 |
T |
|
| Q |
237 |
tacaagggattcaa |
250 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17512880 |
gccaagggattcaa |
17512893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University