View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_188 (Length: 251)
Name: NF10233A_low_188
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_188 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 53984798 - 53985024
Alignment:
| Q |
6 |
actgagaagaaatgcacgtcggaatattttgtggatagtgccaaatgtccccataaattccattctctatttcctgtaataagatggagggagcattaag |
105 |
Q |
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| T |
53984798 |
actgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaag |
53984897 |
T |
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| Q |
106 |
acgtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggacta |
205 |
Q |
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| T |
53984898 |
acgtgtgtagaggtagatttaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggacta |
53984997 |
T |
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| Q |
206 |
tgttgaatcacgtctagcatccacttc |
232 |
Q |
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| T |
53984998 |
tgttgaagcacgtctagcatccacttc |
53985024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 53971094 - 53971315
Alignment:
| Q |
7 |
ctgagaagaaatgcacgtcggaatattttgtggatagtgccaaatgtccccataaattccattctctatttcctgtaataagatggagggagcattaaga |
106 |
Q |
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| T |
53971094 |
ctgagatgaaatacatgtcggaacattttgtgggtcctgccaattgtcctcataaattccatcctccatctcctacaataagacggagggggtagtaaga |
53971193 |
T |
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| Q |
107 |
cgtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcata-tcttaaacctgatgaatggtaagatgttgaagtttgggacta |
205 |
Q |
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| T |
53971194 |
catgt--agaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggacta |
53971291 |
T |
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| Q |
206 |
tgttgaatcacgtctagcatccac |
229 |
Q |
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|||| | |||||||||||||||| |
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| T |
53971292 |
tgttagagcacgtctagcatccac |
53971315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 19935421 - 19935380
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgtt |
209 |
Q |
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| T |
19935421 |
aaacctgatgaatggtaagattttgaagtttgggacaatgtt |
19935380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 19966560 - 19966519
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgtt |
209 |
Q |
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| T |
19966560 |
aaacctgatgaatggtaagattttgaagtttgggacaatgtt |
19966519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 31014529 - 31014485
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaa |
212 |
Q |
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| T |
31014529 |
aaaccttatgaatgataagatgttgaagcttgggactgtgttgaa |
31014485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 34036358 - 34036297
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaatcacgtctagcatccac |
229 |
Q |
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| T |
34036358 |
aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatccac |
34036297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 6688157 - 6688093
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaatcacgtctagcatccacttc |
232 |
Q |
| |
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|||||| ||||||| ||||||||||||| |||||||| ||||||| || |||| |||||||||| |
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| T |
6688157 |
aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccacttc |
6688093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 16163998 - 16164058
Alignment:
| Q |
169 |
aacctgatgaatggtaagatgttgaagtttgggactatgttgaatcacgtctagcatccac |
229 |
Q |
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| T |
16163998 |
aacctgatgaatggcaagatgttcaagcttgggcctctgttgaagcacttctagcatccac |
16164058 |
T |
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