View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_189 (Length: 250)
Name: NF10233A_low_189
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_189 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 27867 - 28093
Alignment:
| Q |
1 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27867 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
27966 |
T |
|
| Q |
101 |
agtactgggctgatcgttgtctgttttgcgaggataagaagaattctgagtggaggaaaaattcctataagaatgcttcttcggtaaatgtttctccact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
27967 |
agtactgggctgatcgttgtctgttttgcggggataagaagaattctcagtggaggaaaaattcctataagaatgcttcttgggtaaatgtttctccact |
28066 |
T |
|
| Q |
201 |
cgcatggccaaacgaacaacatcgtct |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
28067 |
cgcatggccaaacgaacaacatcgtct |
28093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 88222 - 87996
Alignment:
| Q |
1 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
88222 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
88123 |
T |
|
| Q |
101 |
agtactgggctgatcgttgtctgttttgcgaggataagaagaattctgagtggaggaaaaattcctataagaatgcttcttcggtaaatgtttctccact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
88122 |
agtactgggctgatcgttgtctgttttgcggggataagaagaattctcagtggaggaaaaattcctataagaatgcttcttgggtaaatgtttctccact |
88023 |
T |
|
| Q |
201 |
cgcatggccaaacgaacaacatcgtct |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
88022 |
cgcatggccaaacgaacaacatcgtct |
87996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11713076 - 11712850
Alignment:
| Q |
1 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11713076 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
11712977 |
T |
|
| Q |
101 |
agtactgggctgatcgttgtctgttttgcgaggataagaagaattctgagtggaggaaaaattcctataagaatgcttcttcggtaaatgtttctccact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
11712976 |
agtactgggctgatcgttgtctgttttgcggggataagaagaattctcagtggaggaaaaattcctataagaatgcttcttgggtaaatgtttctccact |
11712877 |
T |
|
| Q |
201 |
cgcatggccaaacgaacaacatcgtct |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
11712876 |
cgcatggccaaacgaacaacatcgtct |
11712850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13162285 - 13162058
Alignment:
| Q |
1 |
ttggacaatttgaagctatatgtccaaaacctt-gacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
13162285 |
ttggacaatttgaagctatatgtccaaaacctttgacatttgaaacactttgtagctttgggtttattttctgtggtgggtttagaagaaggttttgtag |
13162186 |
T |
|
| Q |
100 |
aagtactgggctgatcgttgtctgttttgcgaggataagaagaattctgagtggaggaaaaattcctataagaatgcttcttcggtaaatgtttctccac |
199 |
Q |
| |
|
||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
13162185 |
aagtattgggctgatcattgtctgttttgcggggataagaagaattcttagtggaggaaaaattcctataagaatgcttcttgggtaaatgtttctccac |
13162086 |
T |
|
| Q |
200 |
tcgcatggccaaacgaacaacatcgtct |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
13162085 |
tcgcatggccaaacgaacaacatcgtct |
13162058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13721452 - 13721678
Alignment:
| Q |
1 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13721452 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
13721551 |
T |
|
| Q |
101 |
agtactgggctgatcgttgtctgttttgcgaggataagaagaattctgagtggaggaaaaattcctataagaatgcttcttcggtaaatgtttctccact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13721552 |
agtactgggctgatcgttgtctgttttgcggggataagaagaattctcagtggaggaaaaattcctataagaatgcttcttgggtaaatgtttctccact |
13721651 |
T |
|
| Q |
201 |
cgcatggccaaacgaacaacatcgtct |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
13721652 |
cgcatggccaaacgaacaacatcgtct |
13721678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5381685 - 5381911
Alignment:
| Q |
1 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5381685 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
5381784 |
T |
|
| Q |
101 |
agtactgggctgatcgttgtctgttttgcgaggataagaagaattctgagtggaggaaaaattcctataagaatgcttcttcggtaaatgtttctccact |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5381785 |
agtactaggctgatcgttgtctgttttgcggggataagaagaattctcagtggaggaaaaattcctataagaatgcttcttgggtaaatgtttctccact |
5381884 |
T |
|
| Q |
201 |
cgcatggccaaacgaacaacatcgtct |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5381885 |
cgcatggccaaacgaacaacatcgtct |
5381911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 42377094 - 42376868
Alignment:
| Q |
1 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42377094 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
42376995 |
T |
|
| Q |
101 |
agtactgggctgatcgttgtctgttttgcgaggataagaagaattctgagtggaggaaaaattcctataagaatgcttcttcggtaaatgtttctccact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42376994 |
agtactgggctgatcgttgtctgttttgcggggataagaagaattctcagtggaggaaaaattcctataagaatgcttcttgggtaaatgtttctccact |
42376895 |
T |
|
| Q |
201 |
cgcatggccaaacgaacaacatcgtct |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
42376894 |
cgcatggccaaacgaacaacatcgtct |
42376868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14475215 - 14475441
Alignment:
| Q |
1 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14475215 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtggttttaggagaaggttttgtaga |
14475314 |
T |
|
| Q |
101 |
agtactgggctgatcgttgtctgttttgcgaggataagaagaattctgagtggaggaaaaattcctataagaatgcttcttcggtaaatgtttctccact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14475315 |
agtactgggctgatcgttgtctgttttgcggggataagaagaattctcagtggaggaaaaattcctataagaatgcttcttgggtaaatgtttctccact |
14475414 |
T |
|
| Q |
201 |
cgcatggccaaacgaacaacatcgtct |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
14475415 |
cgcatggccaaacgaacaacatcgtct |
14475441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2795465 - 2795691
Alignment:
| Q |
1 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2795465 |
ttggacaatttgaagctatatgtccaaaaccttgaaatttgaaacacttggtagctttgggtttattttctgtagtgggtttagaagaaggttttgtaga |
2795564 |
T |
|
| Q |
101 |
agtactgggctgatcgttgtctgttttgcgaggataagaagaattctgagtggaggaaaaattcctataagaatgcttcttcggtaaatgtttctccact |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2795565 |
agtgttgggctgatcgttgtctgttttgcggggataagaagaattcttagtggaggaaaaattcctataagaatgcttcttgggtaaatgtttctccact |
2795664 |
T |
|
| Q |
201 |
cgcatggccaaacgaacaacatcgtct |
227 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
2795665 |
cacatggccaaacgaacaacatcgtct |
2795691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 16776109 - 16776339
Alignment:
| Q |
1 |
ttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgggtttattttctgtagtgggtttaggagaaggttttgtaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16776109 |
ttggacaatttgaagctatatgtccaaaaccttgacattttaaacacttggtagctttgggtttataatctgtagtgggtttaggagaaggttttgtaga |
16776208 |
T |
|
| Q |
101 |
a----gtactgggctgatcgttgtctgttttgcgaggataagaagaattctgagtggaggaaaaattcctataagaatgcttcttcggtaaatgtttctc |
196 |
Q |
| |
|
| ||||| ||||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16776209 |
agtacgtactaggctgatcgttttctgttttgtagggataagaagaattctcagtggaggtaaaattcctataagaatgcttcttgggtaaatgtttctc |
16776308 |
T |
|
| Q |
197 |
cactcgcatggccaaacgaacaacatcgtct |
227 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
16776309 |
cactcacatggccaaacgaacaacatcgtct |
16776339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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