View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_193 (Length: 250)

Name: NF10233A_low_193
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_193
NF10233A_low_193
[»] chr6 (1 HSPs)
chr6 (7-250)||(9584935-9585178)
[»] scaffold0532 (2 HSPs)
scaffold0532 (29-246)||(8236-8453)
scaffold0532 (29-246)||(2031-2248)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 9585178 - 9584935
Alignment:
Q  7 ccaatgagatggacatccaacaatctcatagcattttgctttgatgtgtccgttttttccacaatgttcacatttaggcctatatccttctcttccttta 106  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9585178 ccaatgtgatggatatccaacaatctcatagcattttgctttgatgtgtccgttttttccacaatgttcacatttaggcctatatccttctcttccttta 9585079  T
Q  107 tgcctacttcctgaagaatagaaagctgttcctagttctgatttgttgattcctttctcactttctgcagaaaagcgtgcctcctctctcaagacatggt 206  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9585078 tgcctacttcctgaagaatagaaagttgttcctagttctgatttgttgtttcctttctcactttctgcagaaaagcgtgcctcctctctcaagacatggt 9584979  T
Q  207 tgaaagaacgtcttagtggaggcaaaggatcagaattaaggatg 250  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  9584978 tgaaagcacgtcttagtggaggcaaaggatcagaattaaggatg 9584935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 8236 - 8453
Alignment:
Q  29 atctcatagcattttgctttgatgtgtccgttttttccacaatgttcacatttaggcctatatccttctcttcctttatgcctacttcctgaagaataga 128  Q
    |||||||| ||||||||||||||||| ||    ||||||||||| ||||| || || ||| | || ||| |||| || ||  | || ||||| || ||||    
T  8236 atctcataacattttgctttgatgtggccaaactttccacaatgatcacacttgggtctagaaccctcttttcccttttgtatgctccctgatgagtaga 8335  T
Q  129 aagctgttcctagttctgatttgttgattcctttctcactttctgcagaaaagcgtgcctcctctctcaagacatggttgaaagaacgtcttagtggagg 228  Q
    ||||  | ||| |||||||| ||||| ||||||||||  | ||||||| ||| |||||||| |||||||||||||| ||||| |  |||||||| |||||    
T  8336 aagcaatcccttgttctgatctgttgtttcctttctccttatctgcagcaaatcgtgcctcttctctcaagacatgattgaaggctcgtcttagcggagg 8435  T
Q  229 caaaggatcagaattaag 246  Q
    ||| ||||||||||||||    
T  8436 caatggatcagaattaag 8453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 2031 - 2248
Alignment:
Q  29 atctcatagcattttgctttgatgtgtccgttttttccacaatgttcacatttaggcctatatccttctcttcctttatgcctacttcctgaagaataga 128  Q
    |||||||| ||||||||||||||||| ||    ||||||||||| ||||| || || ||| | || ||| |||| || ||  | || ||||| || ||||    
T  2031 atctcataacattttgctttgatgtggccaaactttccacaatgatcacacttgggtctagaaccctcttttcccttttgtatgctccctgatgagtaga 2130  T
Q  129 aagctgttcctagttctgatttgttgattcctttctcactttctgcagaaaagcgtgcctcctctctcaagacatggttgaaagaacgtcttagtggagg 228  Q
    ||||  | ||| |||||||| ||||| | ||||||||  | ||||||| ||| |||||||| |||||||||||||| ||||| |  |||||||| |||||    
T  2131 aagcaatcccttgttctgatctgttgttacctttctccttatctgcagcaaatcgtgcctcttctctcaagacatgattgaaggctcgtcttagcggagg 2230  T
Q  229 caaaggatcagaattaag 246  Q
    ||| ||||||||||||||    
T  2231 caatggatcagaattaag 2248  T

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