View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_194 (Length: 250)
Name: NF10233A_low_194
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_194 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 13879871 - 13879697
Alignment:
| Q |
1 |
gtcaactgtcaacacaatggcattttcccgcctcctttcttcctcttaccactctttcatgtccgccgtgcctgcattcattcgccaccgccccttcgct |
100 |
Q |
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| T |
13879871 |
gtcaactgttaacacaatggcattttcccgcctcctttcttcctcttaccactctttcatgtccgccgtgcctgcattcattcgccaccgccccttcgct |
13879772 |
T |
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| Q |
101 |
actgccgccatgtctctggttgccatctcctacgctgctcctcgactcattcactatttcaacaccaatgagctg |
175 |
Q |
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| T |
13879771 |
actgccgccatgtctctggttgccatctcctacgccactccacgactcattcgctatttcaacaccaatgagctg |
13879697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 13875640 - 13875477
Alignment:
| Q |
9 |
tcaacacaatggcattttcccgcctcctttcttcctcttaccactctttcatgtccgccgtgcctgcattcattcgccaccgccccttcgctactgccgc |
108 |
Q |
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| T |
13875640 |
tcaacacaatggcattttcccgcctcctctcttcctgctaccgctcattcatggccgccgtgccttcactcattcgccgccaccccgtcgctactgccgc |
13875541 |
T |
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| Q |
109 |
catgtctctggttgccatctcctacgctgctcctcgactcattcactatttcaacaccaatgag |
172 |
Q |
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| T |
13875540 |
catgtcactcgtagccatctcctacaccgcacctccactcattcgctatttcaacaccaatgag |
13875477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 13879675 - 13879630
Alignment:
| Q |
200 |
gatgatgatgatcttgttctctgggattttacggagactgaggagt |
245 |
Q |
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| T |
13879675 |
gatgatgatgatcttgttctctgggattttacggagactgaggagt |
13879630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 13885756 - 13885720
Alignment:
| Q |
9 |
tcaacacaatggcattttcccgcctcctttcttcctc |
45 |
Q |
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| T |
13885756 |
tcaacacaatggcattttcccgcttcctctcttcctc |
13885720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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