View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_20 (Length: 431)
Name: NF10233A_low_20
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 45330303 - 45329886
Alignment:
| Q |
10 |
ctggtgctttgtaatgatagtttgctttgcattttacacactgaactaaagctgtgaattttagctggtacataggttcatccatgtggccaatatcgca |
109 |
Q |
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| T |
45330303 |
ctggtgctttataatgatagtttgctttgcattttacacactgaactaaagctgtgaattttagctggtacataggttcatccatgtggccaatatcgca |
45330204 |
T |
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| Q |
110 |
agaacactgttgttggcatccttcaagcagaccctgggctggcgcttctgtttcgtatccaaaaattcattttcaatccattatataatcatcataaaga |
209 |
Q |
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| T |
45330203 |
agaacactgttgttggcatccttcaagcagaacatgggctggcgcctctgtttcgtatccaaaaattcattttcaatccattatataatcatcataaaga |
45330104 |
T |
|
| Q |
210 |
ggtgtatcttataatgacaaggttgtcaatttgaaattacattaaaatgtagcttctcccttacacattttgcatacttatatttgaatgtatctatcca |
309 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45330103 |
ggtgtatcttataatgataaggttgtcaatttgaaattacatt-aaatatagcttctcccttacacattttgcatacttatatttgaatgtatctatcca |
45330005 |
T |
|
| Q |
310 |
atttttactttcattttcccttaatctctcagagtttaccattctgtacttgaattttcttttatatcccgaactttatccatttttgtacttgctatgt |
409 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45330004 |
atttttacattcattttcccttaatctctcagagtttaccattctgtacttgaattttcttttatatcccgaactttatccatttttgtacttgctatgt |
45329905 |
T |
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| Q |
410 |
tccttgacatgattatctc |
428 |
Q |
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|||||||||||||| |||| |
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| T |
45329904 |
tccttgacatgattgtctc |
45329886 |
T |
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