View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_200 (Length: 250)
Name: NF10233A_low_200
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_200 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 23609726 - 23609850
Alignment:
| Q |
111 |
aaagacaacatacttttattacactgtctacatcctcctcgtcatcctctttaaaataatagtgacccattaatctccaaacttcatgtggcagcacacg |
210 |
Q |
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| T |
23609726 |
aaagacaacataattttattacactgtctacatcttcctcgtcatcctttttaaaataatagtgaccc---aatctccaaacttcatgtgacagcacacg |
23609822 |
T |
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| Q |
211 |
atgagattgatatgtgatcatatatatt |
238 |
Q |
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| T |
23609823 |
ataagattgatatgtgatcatatatatt |
23609850 |
T |
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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 23609572 - 23609654
Alignment:
| Q |
14 |
aaaatatcctccactatttcgatgtattttctgaaatatataggccaacaaacttctagctttgatcatacatacgcacacac |
96 |
Q |
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| T |
23609572 |
aaaatatcctccactatttcgatgtattttctgaaatatattggccaacaaacttctagctttgatcatacatacacacacac |
23609654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 23609295 - 23609218
Alignment:
| Q |
19 |
atcctccactatttcgatgtattttctgaaatatataggccaacaaacttctagctttgatcatacatacgcacacac |
96 |
Q |
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| T |
23609295 |
atcctccactatttctatgtattttctgaaatatattggctaaccgacttctagctttgatcatatgtacacacacac |
23609218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 23623031 - 23623096
Alignment:
| Q |
14 |
aaaatatcctccactatttcgatgtattttctgaaatatataggccaacaaacttctagctttgatc |
80 |
Q |
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| T |
23623031 |
aaaaaatcatccactatttcgatgtattttctgaaatatatatg-caccagacttctagctttgatc |
23623096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 23622748 - 23622673
Alignment:
| Q |
19 |
atcctccactatttcgatgtattttctgaaatatataggccaacaaacttctagctttgatcatacatacgcacaca |
95 |
Q |
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| T |
23622748 |
atcctccactatt-ctatgtatattctgaaatatattggccaacatacttcttgctataatcatacgtacacacaca |
23622673 |
T |
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