View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_201 (Length: 250)

Name: NF10233A_low_201
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_201
NF10233A_low_201
[»] chr3 (3 HSPs)
chr3 (1-237)||(6252172-6252408)
chr3 (1-237)||(6172828-6173064)
chr3 (66-224)||(49018903-49019061)
[»] chr5 (2 HSPs)
chr5 (1-225)||(434244-434468)
chr5 (20-220)||(6821118-6821318)
[»] chr6 (5 HSPs)
chr6 (20-225)||(10404425-10404630)
chr6 (44-224)||(29337053-29337234)
chr6 (147-224)||(32116582-32116659)
chr6 (144-224)||(32120878-32120958)
chr6 (146-199)||(26224874-26224927)
[»] chr7 (2 HSPs)
chr7 (9-224)||(19278121-19278336)
chr7 (96-221)||(47680075-47680199)
[»] chr1 (6 HSPs)
chr1 (57-224)||(28040116-28040283)
chr1 (23-224)||(37201205-37201406)
chr1 (58-224)||(7793907-7794073)
chr1 (20-224)||(19036376-19036580)
chr1 (97-224)||(18282192-18282319)
chr1 (1-211)||(32499841-32500051)
[»] chr2 (2 HSPs)
chr2 (1-222)||(9684368-9684589)
chr2 (41-223)||(8589017-8589199)
[»] chr8 (6 HSPs)
chr8 (57-224)||(24125970-24126137)
chr8 (20-199)||(4700615-4700794)
chr8 (21-193)||(140279-140450)
chr8 (44-224)||(24322574-24322754)
chr8 (1-125)||(10950132-10950256)
chr8 (1-125)||(10958137-10958261)
[»] chr4 (3 HSPs)
chr4 (116-204)||(25706523-25706611)
chr4 (40-196)||(23808670-23808826)
chr4 (178-224)||(56461225-56461271)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 6252172 - 6252408
Alignment:
Q  1 gttttgtcgaggagttagtcatgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctact 100  Q
    ||||| |||||| ||| ||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  6252172 gttttatcgaggggttggtcatgaagagagtttccagtgttgttgagttaatgcaacttcttccacagttacgagatcctcagagtgagcatcttctact 6252271  T
Q  101 tcgatcatgcatgggtatcgccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgt 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  6252272 tcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcgattgtgttgtttgataaagagttgtgt 6252371  T
Q  201 ggagtggttgaggatattgtggtttattgatgtccat 237  Q
    |||||||||||||||||||||||||||||| ||||||    
T  6252372 ggagtggttgaggatattgtggtttattgaggtccat 6252408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 6172828 - 6173064
Alignment:
Q  1 gttttgtcgaggagttagtcatgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctact 100  Q
    ||||| |||||  ||| ||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||    
T  6172828 gttttatcgagaggttggtcatgaagagagtttccagtgttgttgagttaatgcaccttcttccacagttacgagatcctcagagtgagcatcttctact 6172927  T
Q  101 tcgatcatgcatgggtatcgccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgt 200  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  6172928 tcgatcatgcatgggtatcgccaaaattttcgttgacctaagaacgtgccaaccaattcacatggaggaggtggttgtgttgtttgataaagagttgtgt 6173027  T
Q  201 ggagtggttgaggatattgtggtttattgatgtccat 237  Q
    |||| |||||||||||||||||||||| || ||||||    
T  6173028 ggagcggttgaggatattgtggtttatggaggtccat 6173064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 224
Target Start/End: Complemental strand, 49019061 - 49018903
Alignment:
Q  66 cagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatcgccaaaattttcttagacctaagaacgtgccaaccgattcacatga 165  Q
    |||||||||| |||||| ||||||  |||| |||||||||| || || ||||| |||||| ||||||| | |  ||| |  || || ||||||||||||     
T  49019061 cagttacgagctcctcatagttagtctcttttacttcgatcgtgtataggtattgccaaacttttctttggctgaaggatatgtcagccgattcacatgg 49018962  T
Q  166 aggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt 224  Q
    ||||||| | | ||||||||||||||||| | ||||||| ||||||||| |||||||||    
T  49018961 aggaggcagctatgttgtttgataaagagctatgtggaggggttgaggacattgtggtt 49018903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 434468 - 434244
Alignment:
Q  1 gttttgtcgaggagttagtcatgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctact 100  Q
    ||||| |||||| ||| | ||| ||||||||||||||  |||||||||||||| | |||||||||| |||||||||||||||| || ||  | |||||||    
T  434468 gttttatcgaggggttggccataaagagagcttccagagttgttgagttaatgcaccttcttccacggttacgagatcctcagcgtgagatttttctact 434369  T
Q  101 tcgatcatgcatgggtatcgccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgt 200  Q
    ||||||||||||||||||| ||||| ||||||| | |||| |||| || |||||| |||||||| ||||| ||  | ||||||| |||||||||||||||    
T  434368 tcgatcatgcatgggtatcaccaaacttttctttggcctatgaacctgtcaaccggttcacatggaggagacgactatgttgttcgataaagagttgtgt 434269  T
Q  201 ggagtggttgaggatattgtggttt 225  Q
    ||||  |||||||||||||||||||    
T  434268 ggagcagttgaggatattgtggttt 434244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 6821118 - 6821318
Alignment:
Q  20 catgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatc 119  Q
    |||||||||||||| |||  ||||||||||| || | |||||||||||  || ||||| |||| | | ||| ||||||||||||||||| ||||||||||    
T  6821118 catgaagagagctttcagggttgttgagttagtgcatcttcttccacaactaagagattctcatactgagcttcttctacttcgatcatacatgggtatc 6821217  T
Q  120 gccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattg 219  Q
     ||||| ||||||| | |||||| | ||||||||| ||||||||| | || |||  | ||||||| ||||||||||||||||||||||||||||||||||    
T  6821218 accaaagttttctttggcctaaggatgtgccaaccaattcacatggaagaagcgactatgttgttcgataaagagttgtgtggagtggttgaggatattg 6821317  T
Q  220 t 220  Q
    |    
T  6821318 t 6821318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 10404630 - 10404425
Alignment:
Q  20 catgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatc 119  Q
    ||||||||||||||||||  ||||||||||||||   |||||| || |||||||||||||| ||||| ||| |||||||||||||||||||||||||||     
T  10404630 catgaagagagcttccagggttgttgagttaatgctccttctttcatagttacgagatccttagagtgagcttcttctacttcgatcatgcatgggtatt 10404531  T
Q  120 gccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattg 219  Q
    |||||||||||||| | | |||||| ||||||||| ||||||||| || ||| |  | ||||||||||||| ||| |  |||||| ||||||||||||||    
T  10404530 gccaaaattttctttggcataagaatgtgccaaccaattcacatggagaaggtgactatgttgtttgataatgagcttcgtggagcggttgaggatattg 10404431  T
Q  220 tggttt 225  Q
    ||||||    
T  10404430 tggttt 10404425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 29337053 - 29337234
Alignment:
Q  44 tgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatcgccaaaattttcttagacctaaga 143  Q
    |||||||||| | ||||||||||||||| |||||||||||||| ||| ||||||||||| ||| |||| ||||||||||||| ||||||| | ||||||     
T  29337053 tgagttaatgcatcttcttccacagttatgagatcctcagagtgagcttcttctacttcaatcgtgcaagggtatcgccaaagttttctttggcctaagg 29337152  T
Q  144 acgtgccaaccgattcacatgaaggaggcggttgtg-ttgtttgataaagagttgtgtggagtggttgaggatattgtggtt 224  Q
    |||||||| |||||||||||| |||| |||| | || || ||||||||||||||| |||||||||||||||| |||||||||    
T  29337153 acgtgccagccgattcacatggaggaagcggctatgtttttttgataaagagttgcgtggagtggttgaggacattgtggtt 29337234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 32116659 - 32116582
Alignment:
Q  147 tgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt 224  Q
    |||||||||||||||||| ||||||||  | |||||||||||||||||||| |||||| ||||||||| |||||||||    
T  32116659 tgccaaccgattcacatggaggaggcgactatgttgtttgataaagagttgggtggagcggttgaggacattgtggtt 32116582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 32120958 - 32120878
Alignment:
Q  144 acgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt 224  Q
    ||||| ||||||||||||||| |||||| || | ||||||||||||||||| || |||||||| ||||||| | |||||||    
T  32120958 acgtgtcaaccgattcacatggaggaggtggctatgttgtttgataaagagctgcgtggagtgattgaggacaatgtggtt 32120878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 26224874 - 26224927
Alignment:
Q  146 gtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtg 199  Q
    |||||||||||| |||||| ||||||||  | |||||||||| |||||||||||    
T  26224874 gtgccaaccgatgcacatggaggaggcgtctatgttgtttgacaaagagttgtg 26224927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 19278336 - 19278121
Alignment:
Q  9 gaggagttagtcatgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctacttcgatcat 108  Q
    |||| ||||| |||||| |||||||||||   || |||||||||| | |||||||| |||||||| |||||||| ||| ||| |||||||||| |||| |    
T  19278336 gaggggttagccatgaatagagcttccagggctgctgagttaatgcatcttcttcctcagttacgggatcctcatagtgagcttcttctactttgatcgt 19278237  T
Q  109 gcatgggtatcgccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggagtggt 208  Q
    |||||||||| |||||| ||||| | | | |||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| || ||| |  |||    
T  19278236 gcatgggtattgccaaatttttcattggcttaagaacgtgccaaccgattcacatggaggaggcggctatgttgtttaataaagagctgcgtgaaacggt 19278137  T
Q  209 tgaggatattgtggtt 224  Q
    |||||| |||||||||    
T  19278136 tgaggacattgtggtt 19278121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 47680199 - 47680075
Alignment:
Q  96 ctacttcgatcatgcatgggtatcgccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagt 195  Q
    ||||||| |||||||||||||||||  ||| |||| || | || ||| | ||||||||||||||| ||| | || |||  | ||||||||||||||||||    
T  47680199 ctacttctatcatgcatgggtatcgttaaagtttttttgg-ccaaaggatgtgccaaccgattcatatgcaagatgcgactatgttgtttgataaagagt 47680101  T
Q  196 tgtgtggagtggttgaggatattgtg 221  Q
    ||||||||| ||||||||| ||||||    
T  47680100 tgtgtggagcggttgaggacattgtg 47680075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 57 - 224
Target Start/End: Original strand, 28040116 - 28040283
Alignment:
Q  57 cttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatcgccaaaattttcttagacctaagaacgtgccaaccga 156  Q
    |||||||| ||||||||  ||||||||||||||| ||||||||||||||| ||||||||||| |||||  ||||||| | | |||| |||||||||||||    
T  28040116 cttcttcctcagttacggaatcctcagagttagcttcttctacttcgatcgtgcatgggtattgccaatcttttctttggcttaaggacgtgccaaccga 28040215  T
Q  157 ttcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt 224  Q
    |||||||| |||||| || | || ||||||||||| ||||| ||| || ||||||||| |||||||||    
T  28040216 ttcacatggaggaggtggctatggtgtttgataaaaagttgcgtgaagcggttgaggacattgtggtt 28040283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 37201406 - 37201205
Alignment:
Q  23 gaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatcgcc 122  Q
    ||||||||||||||| | |  |||||||||||| ||||||| ||| |||| ||||||||| ||| | | | || |||||| | ||| |||||||||| ||    
T  37201406 gaagagagcttccaggactactgagttaatgtatcttcttctacacttacaagatcctcaaagtgaacttattttacttcaagcatacatgggtatcacc 37201307  T
Q  123 aaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtgg 222  Q
    ||| |||||||||||||||| || ||||||  |||||||||||| ||||||  | || ||||||||||||||||| |||||| ||||||||| |||||||    
T  37201306 aaatttttcttagacctaaggacatgccaattgattcacatgaaagaggcgactatgatgtttgataaagagttgcgtggagcggttgaggacattgtgg 37201207  T
Q  223 tt 224  Q
    ||    
T  37201206 tt 37201205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 7793907 - 7794073
Alignment:
Q  58 ttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatcgccaaaattttcttagacctaagaacgtgccaaccgat 157  Q
    |||||||||| |||||||||| ||| | | ||| ||||||||||||||||||  |||||||| ||||||||||||| | |||||| ||||||||||| ||    
T  7793907 ttcttccacaattacgagatcgtcataatgagcttcttctacttcgatcatgtttgggtatcaccaaaattttctttggcctaaggacgtgccaaccaat 7794006  T
Q  158 tcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt 224  Q
    ||||||| ||||||||  | |||| ||||||||||| ||| ||||||| ||||||||  ||||||||    
T  7794007 tcacatggaggaggcgactatgttatttgataaagaattgggtggagtagttgaggacgttgtggtt 7794073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 19036580 - 19036376
Alignment:
Q  20 catgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatc 119  Q
    ||||||||||||||||||   || |||||||||| | |||||||| |||||||| |||||||||||| ||| ||||||||||||||  |||||||||||     
T  19036580 catgaagagagcttccagggctgctgagttaatgcatcttcttcctcagttacgggatcctcagagtgagcttcttctacttcgattgtgcatgggtatt 19036481  T
Q  120 gccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattg 219  Q
    ||||||  ||| |  | | |||| ||||||||   |||||||||| ||||||||    |||||||| ||||||||||| ||| || ||||||||| ||||    
T  19036480 gccaaatatttatctggcttaaggacgtgccagttgattcacatggaggaggcgaccatgttgttttataaagagttgcgtgaagcggttgaggacattg 19036381  T
Q  220 tggtt 224  Q
    |||||    
T  19036380 tggtt 19036376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 18282319 - 18282192
Alignment:
Q  97 tacttcgatcatgcatgggtatcgccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagtt 196  Q
    |||||||||||||||||||||| |||||| ||||||| | |||||| || |||||||| |||||||||  ||||| || | ||||||||||| |||||||    
T  18282319 tacttcgatcatgcatgggtattgccaaacttttcttcggcctaaggacatgccaaccaattcacatggtggaggtggctatgttgtttgatcaagagtt 18282220  T
Q  197 gtgtggagtggttgaggatattgtggtt 224  Q
      ||||||  |||||||| |||| ||||    
T  18282219 ccgtggagcagttgaggacattgcggtt 18282192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 32499841 - 32500051
Alignment:
Q  1 gttttgtcgaggagttagtcatgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctact 100  Q
    ||||| |||||| ||||| || ||| |||||||| ||  |||||||||||||| |  |||||||| | ||| ||||||   | | | ||  |||||||||    
T  32499841 gttttatcgaggggttagccaggaatagagcttctagagttgttgagttaatgcattttcttccataattaagagatctctaaaatgagtttcttctact 32499940  T
Q  101 tcgatcatgcatgggtatcgccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgt 200  Q
    ||||||||||||||||||||||||| ||| ||| ||||| || || ||| |||| |||||  || |||||  | || ||||| |||||||| ||||||||    
T  32499941 tcgatcatgcatgggtatcgccaaactttcctttgacctgaggacatgctaaccaattcatgtggaggagatgattatgttgcttgataaaaagttgtgt 32500040  T
Q  201 ggagtggttga 211  Q
     ||| ||||||    
T  32500041 agagcggttga 32500051  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9684368 - 9684589
Alignment:
Q  1 gttttgtcgaggagttagtcatgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctact 100  Q
    ||||| |||||| ||| | |||||||||||||| |||   || |||||||||| | |||||||| || ||||| |||||||||||| ||| |||||||||    
T  9684368 gttttatcgaggggttggccatgaagagagctttcagggctgctgagttaatgcatcttcttcctcacttacgggatcctcagagtgagcttcttctact 9684467  T
Q  101 tcgatcatgcatgggtatcgccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgt 200  Q
    |||| | ||||||||||| ||| || ||||||| | | |||| || || ||||| ||||||||| ||||||||| | ||||||||||||||||| || ||    
T  9684468 tcgaacgtgcatgggtattgcccaacttttctttggcttaaggacatgtcaaccaattcacatggaggaggcggctatgttgtttgataaagagctgcgt 9684567  T
Q  201 ggagtggttgaggatattgtgg 222  Q
    | || ||||||||| |||||||    
T  9684568 gaagcggttgaggacattgtgg 9684589  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 8589199 - 8589017
Alignment:
Q  41 tgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatcgccaaaattttcttagaccta 140  Q
    ||||||||||||| |  |||||||||| ||| | ||||||| |||| | | || ||||||||||||||||||||| ||||| ||| ||||||| | ||||    
T  8589199 tgttgagttaatgcatattcttccacaattaagggatcctccgagtgaacttcctctacttcgatcatgcatgggaatcgctaaacttttctttggccta 8589100  T
Q  141 agaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggt 223  Q
    || | |||||||| |||||||||| | || |||  | |||||||||||||||||||| |||||  |||  |||||||||||||    
T  8589099 aggatgtgccaactgattcacatggatgaagcgactatgttgtttgataaagagttgcgtggatcggtcaaggatattgtggt 8589017  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 24126137 - 24125970
Alignment:
Q  57 cttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatcgccaaaattttcttagacctaagaacgtgccaaccga 156  Q
    |||||||| | ||||||| ||||||||||| ||| ||||||||||||||| |||||||||||  ||| | ||||||| | | |||  |||||||||||||    
T  24126137 cttcttcctcggttacgacatcctcagagtgagcttcttctacttcgatcgtgcatgggtatttccagacttttctttggcttaatgacgtgccaaccga 24126038  T
Q  157 ttcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt 224  Q
     ||||||| ||||||| | |  |||||||||||||||| || |||||| ||||||||| |||||||||    
T  24126037 atcacatggaggaggctgctaagttgtttgataaagagctgcgtggagcggttgaggacattgtggtt 24125970  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 4700794 - 4700615
Alignment:
Q  20 catgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatc 119  Q
    ||||||||||||||||||  |||||||||||||| |   ||||| | |||| | ||||||||||||  ||| |||||||||||||||||||||  |||||    
T  4700794 catgaagagagcttccagggttgttgagttaatgcattgtcttcaatagttgcaagatcctcagagcgagcttcttctacttcgatcatgcatatgtatc 4700695  T
Q  120 gccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtg 199  Q
    ||| ||||| | ||  ||||||| || ||||||| |||||||||| |||||| |  | |||||||| |||||||||||||    
T  4700694 gcccaaattctattcaacctaagcacttgccaactgattcacatggaggaggtgtctttgttgtttaataaagagttgtg 4700615  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 140450 - 140279
Alignment:
Q  21 atgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatcg 120  Q
    ||||||||||||||||| | ||||||||||||| |  ||||||||||| || | |||||| ||||| ||| ||||||||||||||||||||||||||||     
T  140450 atgaagagagcttccaggactgttgagttaatgcattttcttccacagctaagtgatccttagagtgagcttcttctacttcgatcatgcatgggtatca 140351  T
Q  121 ccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaaga 193  Q
    ||||| |||| ||    ||||  |||| |||||||||| ||||  ||||||||| | || |||||||||||||    
T  140350 ccaaacttttattttgtctaatgacgt-ccaaccgatttacatagaggaggcggctatgatgtttgataaaga 140279  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 24322754 - 24322574
Alignment:
Q  44 tgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatcgccaaaattttcttagacctaaga 143  Q
    |||||||||| | ||||||||||| |||||||| |   | ||| ||  |||||||||||||||||||||| ||||||| ||| |||||||    |||||     
T  24322754 tgagttaatgcatcttcttccacaattacgagagctgaatagtgagtttcttctacttcgatcatgcatgagtatcgcgaaacttttctttagtctaagg 24322655  T
Q  144 acgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt 224  Q
    ||||| ||||| ||||||||| |||||| || | |||||||||||||||||||| |||||| |||| ||||  ||||||||    
T  24322654 acgtgtcaaccaattcacatggaggaggaggctatgttgtttgataaagagttgcgtggagaggttaaggactttgtggtt 24322574  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 10950132 - 10950256
Alignment:
Q  1 gttttgtcgaggagttagtcatgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctact 100  Q
    ||||| |||||| |||| ||||||| |||||||||||  ||| ||||||| || | | | |||||||||||| ||||| ||| ||| ||| |||| ||||    
T  10950132 gttttatcgaggggttaatcatgaatagagcttccagagttgctgagttattgcatccttttccacagttacaagatcatcaaagtgagcttcttttact 10950231  T
Q  101 tcgatcatgcatgggtatcgccaaa 125  Q
    |||||||||||||| ||| ||||||    
T  10950232 tcgatcatgcatggatattgccaaa 10950256  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 10958137 - 10958261
Alignment:
Q  1 gttttgtcgaggagttagtcatgaagagagcttccagtattgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctact 100  Q
    ||||| |||||| |||| ||||||| |||||||||||  ||| ||||||| || | | | |||||||||||| ||||| ||| ||| ||| |||| ||||    
T  10958137 gttttatcgaggggttaatcatgaatagagcttccagagttgctgagttattgcatccttttccacagttacaagatcatcaaagtgagcttcttttact 10958236  T
Q  101 tcgatcatgcatgggtatcgccaaa 125  Q
    |||||||||||||| ||| ||||||    
T  10958237 tcgatcatgcatggatattgccaaa 10958261  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 25706523 - 25706611
Alignment:
Q  116 tatcgccaaaattttcttagacctaagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagttgtgtggag 204  Q
    |||| ||||||||||||| |  ||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||| || ||||||    
T  25706523 tatcaccaaaattttctttggtctaagaacgtgccaaccgattcacatggaggagacggctatgttgtttgataaagagctgcgtggag 25706611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 23808670 - 23808826
Alignment:
Q  40 ttgttgagttaatgtaacttcttccacagttacgagatcctcagagttagcatcttctacttcgatcatgcatgggtatcgccaaaattttcttagacct 139  Q
    |||||||||||||  | ||||||||||||||| | | ||||||  || ||| | ||||||||||| |||||||| |||||  ||||  |||||| | ||     
T  23808670 ttgttgagttaatacatcttcttccacagttaaggggtcctcaacgtgagcttattctacttcgaccatgcatgagtatcatcaaacctttctttggcca 23808769  T
Q  140 aagaacgtgccaaccgattcacatgaaggaggcggttgtgttgtttgataaagagtt 196  Q
    ||  || ||||||| |||||||||| | || ||   | |||||||||||||||||||    
T  23808770 aaagacatgccaactgattcacatggatgatgcttctatgttgtttgataaagagtt 23808826  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 56461225 - 56461271
Alignment:
Q  178 tgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt 224  Q
    |||||||||||||||||||| |||||| |||||| || |||||||||    
T  56461225 tgttgtttgataaagagttgcgtggagcggttgaagacattgtggtt 56461271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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