View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_204 (Length: 250)
Name: NF10233A_low_204
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_204 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 37390469 - 37390676
Alignment:
| Q |
30 |
taaaagtcattttggaccaaggtccttggagtcaaatccaggaattatctcaaaataaatttcaacattatgtttacagctacaaatgttatattgactt |
129 |
Q |
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| T |
37390469 |
taaaattcattttggaccaaggtccttggagtcaaatccaggaattatctcaaaataaatttcaacattatgtttactgctacaaatgttatattgactt |
37390568 |
T |
|
| Q |
130 |
actattaaagaagcttcagtttagaactgtgtgtggattgatttttaaaccaaataatcattaagcaaacttcaatttggccaaaattaattccagaaaa |
229 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37390569 |
actattaaagaagcttcagtttagaa-tgtgtgtggattgatttttaaaccaaataatcattaagcaaacttcaatttggccaaaattaattccagaaaa |
37390667 |
T |
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| Q |
230 |
taaaatatt |
238 |
Q |
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||||||||| |
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| T |
37390668 |
taaaatatt |
37390676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 37381603 - 37381811
Alignment:
| Q |
30 |
taaaagtcattttggaccaaggtccttggagtcaaatccaggaattatctcaaaataaatttcaacattatgtttacagctacaaatgttatattgactt |
129 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
37381603 |
taaaattcattttggaccaaggtccttgaagtcaaatccaggaattatctcaatttagatttcaacattatgtttactgctacaaatgttattttgactt |
37381702 |
T |
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| Q |
130 |
actattaaagaagcttcagtttagaactgtgtgtggattgatttttaaaccaaataatcattaagcaaacttcaatttggccaaaattaattccagaaaa |
229 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||| || ||||||||||||||| |||||||||||||||| ||||||||| |||| |
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| T |
37381703 |
actattaaagaagcttcagtttagaactatgtgtggattgaattttaaaacacataatcattaagcaagcttcaatttggccaaacttaattccaaaaaa |
37381802 |
T |
|
| Q |
230 |
taaaatatt |
238 |
Q |
| |
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||||||||| |
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| T |
37381803 |
taaaatatt |
37381811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 37359411 - 37359614
Alignment:
| Q |
30 |
taaaagtcattttggaccaaggtccttggagtcaaatccaggaattatctcaaaataaatttcaacattatgtttacagctacaaatgttatattgactt |
129 |
Q |
| |
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||||| |||||||||||||||| |||||||| |||||||| |||||||| || ||| |||||||||||||||||| |||||||||||||| |||||| |
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| T |
37359411 |
taaaattcattttggaccaaggaccttggagccaaatccaaaaattatctaaatatatatttcaacattatgtttattgctacaaatgttattttgact- |
37359509 |
T |
|
| Q |
130 |
actattaaagaagcttcagtttagaactgtgtgtggattgatttttaaaccaaataatcattaagcaaacttcaatttggccaaaattaattccagaaaa |
229 |
Q |
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||||||| ||||||| | |||||| |||||| | ||||||||||| | |||| |||||||||| ||||||||||| | |||||||||||||||| |
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| T |
37359510 |
--tattaaataagcttcggcgtagaac--tgtgtgaaatgatttttaaatctcataagcattaagcaagcttcaatttggttagaattaattccagaaaa |
37359605 |
T |
|
| Q |
230 |
taaaatatt |
238 |
Q |
| |
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||||||||| |
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| T |
37359606 |
taaaatatt |
37359614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 37368653 - 37368450
Alignment:
| Q |
30 |
taaaagtcattttggaccaaggtccttggagtcaaatccaggaattatctcaaaataaatttcaacattatgtttacagctacaaatgttatattgactt |
129 |
Q |
| |
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||||| |||||||||||||||| |||||||| |||||||| |||||||| || ||| |||||||||||||||||| |||||||||||||| |||||| |
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| T |
37368653 |
taaaattcattttggaccaaggaccttggagccaaatccaaaaattatctaaatatatatttcaacattatgtttattgctacaaatgttattttgact- |
37368555 |
T |
|
| Q |
130 |
actattaaagaagcttcagtttagaactgtgtgtggattgatttttaaaccaaataatcattaagcaaacttcaatttggccaaaattaattccagaaaa |
229 |
Q |
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||||||| ||||||| | |||||| |||||| | ||||||||||| | |||| |||||||||| ||||||||||| | |||||||||||||||| |
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| T |
37368554 |
--tattaaataagcttcggcgtagaac--tgtgtgaaatgatttttaaatctcataagcattaagcaagcttcaatttggttagaattaattccagaaaa |
37368459 |
T |
|
| Q |
230 |
taaaatatt |
238 |
Q |
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||||||||| |
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| T |
37368458 |
taaaatatt |
37368450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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