View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_205 (Length: 249)

Name: NF10233A_low_205
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_205
NF10233A_low_205
[»] chr5 (5 HSPs)
chr5 (15-137)||(5805034-5805156)
chr5 (202-236)||(5805221-5805255)
chr5 (100-134)||(33122639-33122673)
chr5 (99-134)||(16870240-16870275)
chr5 (102-130)||(31738343-31738371)
[»] chr3 (1 HSPs)
chr3 (82-134)||(39022659-39022711)
[»] chr1 (2 HSPs)
chr1 (82-130)||(50597466-50597514)
chr1 (105-133)||(18376444-18376472)
[»] chr2 (3 HSPs)
chr2 (99-133)||(9557297-9557331)
chr2 (95-132)||(21372057-21372094)
chr2 (82-130)||(18953375-18953423)
[»] chr7 (1 HSPs)
chr7 (93-133)||(43881112-43881152)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 5805034 - 5805156
Alignment:
Q  15 gacatcaaagactaaaaataacggtttttaagtttgcagggtcatgatccaaacnnnnnnngaaactactaaaaccagataatgctataattgcagagac 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  5805034 gacatcaaagactaaaaataaaggtttttaagtttgcagggtcatgatccaaacaaaaaaagaaactactaaaaccagataatgctataattgcagagac 5805133  T
Q  115 taaaatcatatttaaacctactt 137  Q
    |||||||||||||||||||||||    
T  5805134 taaaatcatatttaaacctactt 5805156  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 5805221 - 5805255
Alignment:
Q  202 ttaccaatctaaagcagtaatgacaacaccagccc 236  Q
    |||||||||||||||||||||||||||||||||||    
T  5805221 ttaccaatctaaagcagtaatgacaacaccagccc 5805255  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 33122639 - 33122673
Alignment:
Q  100 tataattgcagagactaaaatcatatttaaaccta 134  Q
    |||||||||||||||||||||||||||||||||||    
T  33122639 tataattgcagagactaaaatcatatttaaaccta 33122673  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 16870240 - 16870275
Alignment:
Q  99 ctataattgcagagactaaaatcatatttaaaccta 134  Q
    |||||||||||| |||||||||||||||||||||||    
T  16870240 ctataattgcagggactaaaatcatatttaaaccta 16870275  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 130
Target Start/End: Complemental strand, 31738371 - 31738343
Alignment:
Q  102 taattgcagagactaaaatcatatttaaa 130  Q
    |||||||||||||||||||||||||||||    
T  31738371 taattgcagagactaaaatcatatttaaa 31738343  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 39022711 - 39022659
Alignment:
Q  82 actaaaaccagataatgctataattgcagagactaaaatcatatttaaaccta 134  Q
    |||||||||| | || || ||||||||||||||||||||||||| ||||||||    
T  39022711 actaaaaccaaaaaaagcgataattgcagagactaaaatcatatctaaaccta 39022659  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 50597466 - 50597514
Alignment:
Q  82 actaaaaccagataatgctataattgcagagactaaaatcatatttaaa 130  Q
    |||||||||| | |||| |||||||| ||||||||||||||||||||||    
T  50597466 actaaaaccaaaaaatgttataattgtagagactaaaatcatatttaaa 50597514  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 18376472 - 18376444
Alignment:
Q  105 ttgcagagactaaaatcatatttaaacct 133  Q
    |||||||||||||||||||||||||||||    
T  18376472 ttgcagagactaaaatcatatttaaacct 18376444  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 9557331 - 9557297
Alignment:
Q  99 ctataattgcagagactaaaatcatatttaaacct 133  Q
    |||||||||||||||||| ||||||||||||||||    
T  9557331 ctataattgcagagactacaatcatatttaaacct 9557297  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 21372094 - 21372057
Alignment:
Q  95 aatgctataattgcagagactaaaatcatatttaaacc 132  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  21372094 aatgctataattgcagtgactaagatcatatttaaacc 21372057  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 18953423 - 18953375
Alignment:
Q  82 actaaaaccagataatgctataattgcagagactaaaatcatatttaaa 130  Q
    |||||||||| |||| |||||| ||| | ||||||||||||||||||||    
T  18953423 actaaaaccaaataacgctatagttggatagactaaaatcatatttaaa 18953375  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 43881152 - 43881112
Alignment:
Q  93 ataatgctataattgcagagactaaaatcatatttaaacct 133  Q
    |||||||||||||||||   |||||||||||||||||||||    
T  43881152 ataatgctataattgcaagaactaaaatcatatttaaacct 43881112  T

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