View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_206 (Length: 249)
Name: NF10233A_low_206
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_206 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 1414021 - 1414252
Alignment:
| Q |
18 |
acatcattagtaccgtaaaaaagattaccattgtctaatgtttgtgtcaatcccatctctctgtctttttatccaacacgtgtctcaaagctattgttag |
117 |
Q |
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| T |
1414021 |
acatcattagtaccgtaaaaaagattaccattgtctaatgtttgtgtcaatcccatctctctgtctttttatccaacacgtgtctcaaagctattgttag |
1414120 |
T |
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| Q |
118 |
gcannnnnnnctcacaagtgtttgatccaaaagcatggtgtcccaaagcattctagcatgatccgtaaatacagcatgaaacacattatgtcaaatttac |
217 |
Q |
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| T |
1414121 |
gcatttttttctcacaagtgtttgatccaaaagcatggtgtcccaaagcattctagcatgatccgtaaatacagcatgaaacacattatgtcaaatttac |
1414220 |
T |
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| Q |
218 |
gttttgacaaaattgtcgttgtttatatatta |
249 |
Q |
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| T |
1414221 |
gttttgacaaaattgtcattgtttatatatta |
1414252 |
T |
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