View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_207 (Length: 249)
Name: NF10233A_low_207
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_207 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 32534676 - 32534438
Alignment:
| Q |
11 |
atgaatgcgaactgagttttggtgacaaattgtatcaagctaggaagcatgtgcaggacatgtctagaataacaagagctcattgacatgtgatgaccaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32534676 |
atgaatgcgaactgagttttggtgacaaattgtatcaagctaggaagcatgtgtaggacatgtatagaataacaagaggtcattgacatgtgatgaccaa |
32534577 |
T |
|
| Q |
111 |
ttgtagattctacaagacatgatgggctaagatacaacgtgcaaacttaatataatgctaaaataaaaatacaaattctaaattatactactaaagacat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32534576 |
ttgtagattctacaagacatgatgggctaagatacaacgtgcaaacttaatataatgctaacataaaaatacaaattctaaattatactactaaagacat |
32534477 |
T |
|
| Q |
211 |
cattgtttctcaagtcagcattagtcattataaaatact |
249 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
32534476 |
cattgtttcttaagtcagcattagtcattatataatact |
32534438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 32549995 - 32549959
Alignment:
| Q |
20 |
aactgagttttggtgacaaattgtatcaagctaggaa |
56 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32549995 |
aactgagttttggagacaaattgtatcaagctaggaa |
32549959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University