View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_211 (Length: 249)
Name: NF10233A_low_211
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_211 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 34591914 - 34592143
Alignment:
| Q |
13 |
agatggacatcaaaatagcattcttaaaatgtgcatatgaaaacaaaagacatcccagagaagtttaaaggataatgaacacaggcaaaaacttgtgttt |
112 |
Q |
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| T |
34591914 |
agatagacatcaaaatagcattcttaaaatgtgcatatgaaaacaaaagacatcccagagaagtttaaaggataatgaacacaggcaaaaacttgtgttt |
34592013 |
T |
|
| Q |
113 |
cagaatactgttttttattaaataaatttctttagctgaacattttcattgaaaggaaggttgttcaaattgatgttaattataattgttaaatgtacat |
212 |
Q |
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| T |
34592014 |
cagaatactgttttttattaaataaatttctttagctgaacattttcattgaaaggaaggttgttcaaattgatgttaattataattgttaaatgtacat |
34592113 |
T |
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| Q |
213 |
ttggaaactggatggccagaatttacaaca |
242 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34592114 |
ttggaaactggatggccagaatttacaaca |
34592143 |
T |
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