View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_212 (Length: 248)

Name: NF10233A_low_212
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_212
NF10233A_low_212
[»] chr5 (5 HSPs)
chr5 (66-185)||(32268817-32268936)
chr5 (74-209)||(41900181-41900316)
chr5 (153-225)||(32268755-32268825)
chr5 (67-134)||(41886279-41886346)
chr5 (152-201)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (141-208)||(15091347-15091414)
chr7 (143-205)||(10168806-10168868)
chr7 (143-205)||(10176331-10176393)
chr7 (80-121)||(10616209-10616250)
[»] chr4 (18 HSPs)
chr4 (147-208)||(2460597-2460658)
chr4 (129-202)||(2367656-2367729)
chr4 (147-196)||(2547544-2547593)
chr4 (150-202)||(2381378-2381430)
chr4 (148-208)||(6007665-6007725)
chr4 (144-202)||(566629-566687)
chr4 (149-202)||(2525763-2525816)
chr4 (151-196)||(12124836-12124881)
chr4 (151-196)||(12126892-12126937)
chr4 (143-208)||(55907434-55907499)
chr4 (150-202)||(2486313-2486365)
chr4 (150-202)||(5035628-5035680)
chr4 (162-208)||(1547469-1547515)
chr4 (144-194)||(2376228-2376278)
chr4 (150-188)||(2380123-2380161)
chr4 (147-196)||(2472104-2472153)
chr4 (141-181)||(8445271-8445311)
chr4 (161-201)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (141-208)||(513426-513493)
chr3 (143-194)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (142-202)||(14821628-14821688)
chr6 (150-202)||(6395781-6395833)
chr6 (150-198)||(6427432-6427480)
chr6 (162-196)||(6437161-6437195)
chr6 (160-202)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (143-202)||(32152212-32152271)
chr8 (150-196)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (143-208)||(1036176-1036241)
chr2 (143-196)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (153-202)||(15837967-15838016)
chr1 (143-202)||(33161439-33161498)
chr1 (150-194)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 32268936 - 32268817
Alignment:
Q  66 tcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtct 165  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268936 tcaatgatttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtct 32268837  T
Q  166 ccaaacagttactctccatc 185  Q
    ||||||||||||||||||||    
T  32268836 ccaaacagttactctccatc 32268817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 41900181 - 41900316
Alignment:
Q  74 ttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtctccaaacag 173  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| | ||||  | |||||||||||||||  ||||||||||||||    
T  41900181 ttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagacgataatcactacttgaaatctctctcactcgtctccaaacag 41900280  T
Q  174 ttactctccatcaccaaccgtcttcgattatctctt 209  Q
    || |||||||||||||||  ||||||||| ||||||    
T  41900281 tttctctccatcaccaacactcttcgattctctctt 41900316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 32268825 - 32268755
Alignment:
Q  153 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctttcacagtctatgatcc 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat--tctctctcacagtctatgatcc 32268755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 41886279 - 41886346
Alignment:
Q  67 caatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaac 134  Q
    ||||||||  |||||  ||| |||| |||||||||||||||||||||||||||||| |||||||||||    
T  41886279 caatgattggtggtttctatttacctgatgagtgttgggaatgtgtcttcaaattcctgaaagacaac 41886346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 12846992 - 12846943
Alignment:
Q  152 tctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat 201  Q
    ||||||| |||| ||||| ||||| |||||||||||||||||||| ||||    
T  12846992 tctctccctcgtttccaagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 15091347 - 15091414
Alignment:
Q  141 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 208  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||| ||| |||||    
T  15091347 tgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctct 15091414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 10168806 - 10168868
Alignment:
Q  143 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 205  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10168868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 10176331 - 10176393
Alignment:
Q  143 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 205  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10176393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 10616250 - 10616209
Alignment:
Q  80 ttcatatctaccagatgagtgttgggaatgtgtcttcaaatt 121  Q
    ||||||| |||| |||||||||||||||||| ||||||||||    
T  10616250 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 2460658 - 2460597
Alignment:
Q  147 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 208  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  2460658 aaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctct 2460597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 2367656 - 2367729
Alignment:
Q  129 gacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 202  Q
    |||||||| || | |||| || |||| ||||||||||||||||| || |||||||||||||||||||| |||||    
T  2367656 gacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgatt 2367729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 2547593 - 2547544
Alignment:
Q  147 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 196  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  2547593 aaatcgctctccatcgtctccaaacagtttctgtccatcaccaaccgtct 2547544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 2381378 - 2381430
Alignment:
Q  150 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 202  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||| |||||    
T  2381378 tctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgatt 2381430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 6007725 - 6007665
Alignment:
Q  148 aatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 208  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| |||| ||||| |||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctct 6007665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 566687 - 566629
Alignment:
Q  144 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 202  Q
    ||||| ||||||||| | |||||||||||||| |||||||||||| || ||||||||||    
T  566687 ttgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgatt 566629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 2525816 - 2525763
Alignment:
Q  149 atctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 202  Q
    |||||||||| ||||||| |||||||| || |||||||||||| ||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgatt 2525763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 12124881 - 12124836
Alignment:
Q  151 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 196  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 12126937 - 12126892
Alignment:
Q  151 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 196  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 55907434 - 55907499
Alignment:
Q  143 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 208  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  55907434 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 55907499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 2486365 - 2486313
Alignment:
Q  150 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 202  Q
    ||||||||| ||||||| |||||||| || ||||||||||||||||| |||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgatt 2486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 5035680 - 5035628
Alignment:
Q  150 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 202  Q
    ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||    
T  5035680 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 5035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 1547469 - 1547515
Alignment:
Q  162 gtctccaaacagttactctccatcaccaaccgtcttcgattatctct 208  Q
    ||||||||||| || |||||||||||||||||||| ||||| |||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctctct 1547515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 2376228 - 2376278
Alignment:
Q  144 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 194  Q
    ||||| |||||||||||||||||||||   || ||||||||||||||||||    
T  2376228 ttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgt 2376278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 2380123 - 2380161
Alignment:
Q  150 tctctctccatcgtctccaaacagttactctccatcacc 188  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  2380123 tctctttccatcgtctccaaacagttactctcgatcacc 2380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 2472153 - 2472104
Alignment:
Q  147 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 196  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||| |||||    
T  2472153 aaatctctttccatggtctccaaacagtttttctccatcaccaatcgtct 2472104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 8445271 - 8445311
Alignment:
Q  141 tgcttgaaatctctctccatcgtctccaaacagttactctc 181  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  8445271 tgcttaaagtctctctccatcgtctcaaaacagttactctc 8445311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 12121009 - 12121049
Alignment:
Q  161 cgtctccaaacagttactctccatcaccaaccgtcttcgat 201  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  12121009 cgtctcaaagcagttcctctccatcaccaaccgtcttcgat 12121049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 513426 - 513493
Alignment:
Q  141 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 208  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||||||  ||| ||||| |||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 51763146 - 51763197
Alignment:
Q  143 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 194  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||| |||||    
T  51763146 cttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgt 51763197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 14821688 - 14821628
Alignment:
Q  142 gcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 202  Q
    ||||||||| ||||||| |||||||||| ||||| ||||| |||||||| |||||||||||    
T  14821688 gcttgaaatgtctctccctcgtctccaagcagttcctctctatcaccaatcgtcttcgatt 14821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 6395833 - 6395781
Alignment:
Q  150 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 202  Q
    ||||||||| |||||||||| ||||| |||||||||||||| | |||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgatt 6395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 6427480 - 6427432
Alignment:
Q  150 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttc 198  Q
    ||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  6427480 tctctctccctcgtctccaagcagttcctctccatcaccaatcgtcttc 6427432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 6437195 - 6437161
Alignment:
Q  162 gtctccaaacagttactctccatcaccaaccgtct 196  Q
    |||||||||||||| ||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtct 6437161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 7993319 - 7993361
Alignment:
Q  160 tcgtctccaaacagttactctccatcaccaaccgtcttcgatt 202  Q
    |||||||||||||||| ||||||||||||| |||||| |||||    
T  7993319 tcgtctccaaacagttcctctccatcaccagccgtctccgatt 7993361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 32152271 - 32152212
Alignment:
Q  143 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 202  Q
    |||||| || |||||| |||||||||||||||| ||||||||||||||| |||| |||||    
T  32152271 cttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgatt 32152212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 39516915 - 39516869
Alignment:
Q  150 tctctctccatcgtctccaaacagttactctccatcaccaaccgtct 196  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||||||    
T  39516915 tctctctccatcgtctccagacaatttctcgccatcaccaaccgtct 39516869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 1036176 - 1036241
Alignment:
Q  143 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 208  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  1036176 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 1036241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 44575177 - 44575230
Alignment:
Q  143 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 196  Q
    |||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  44575177 cttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtct 44575230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 15837967 - 15838016
Alignment:
Q  153 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 202  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||    
T  15837967 ctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgatt 15838016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 33161498 - 33161439
Alignment:
Q  143 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 202  Q
    |||||| ||||| ||| |||||||||||||||| ||||||||||| ||  ||||||||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgatt 33161439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 52085600 - 52085556
Alignment:
Q  150 tctctctccatcgtctccaaacagttactctccatcaccaaccgt 194  Q
    ||||| ||||||||||||||| |||| || |||||||||||||||    
T  52085600 tctctttccatcgtctccaaaaagttcctttccatcaccaaccgt 52085556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University