View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_216 (Length: 248)
Name: NF10233A_low_216
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_216 |
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| [»] scaffold0532 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 9584824 - 9584596
Alignment:
| Q |
3 |
tggtagtggctgaagctcacttagttcatcaaaaagacctttgaatttcgtgtagaattctgtgacactgagatcatcttccttctgcattaagcagagc |
102 |
Q |
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| T |
9584824 |
tggtagtggctgaagctcacttagttcatcgaaaagacctttgaattttgtgtagaattctgtgacactgagatcatcttccttctgcattaagcagagc |
9584725 |
T |
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| Q |
103 |
gtacgccatagttgatgaatccttggtgcattggtttgagcgaagcgttcttcgagatcgagccagatgtcccttgcggttgatgcatgtgaaatactgc |
202 |
Q |
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| T |
9584724 |
gtatgccatagttgatgaatccttggtgcattggtttgagcgaagcgttcttcgagatcgagccagatgtcccttgcggttgatgcatgtgaaatattgc |
9584625 |
T |
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| Q |
203 |
tatgcagtttctgatcagtggagttgatg |
231 |
Q |
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| T |
9584624 |
tatgcagtttctgatcagtggagttgatg |
9584596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0532 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0532
Description:
Target: scaffold0532; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 2367 - 2584
Alignment:
| Q |
7 |
agtggctgaagctcacttagttcatcaaaaagacctttgaatttcgtgtagaattctgtgacactgagatcatcttccttctgcattaagcagagcgtac |
106 |
Q |
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| T |
2367 |
agtggttggagctcattaagttcatcaaagagaactttgaacttggtgtaaaattcagtcacacttagatcttcctccttctgcattaagcagatagtgc |
2466 |
T |
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| Q |
107 |
gccatagttgatgaatccttggtgcattggtttgagcgaagcgttcttcgagatcgagccagatgtcccttgcggttgatgcatgtgaaatactgctatg |
206 |
Q |
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| T |
2467 |
gccataattgatgaatcctgagtgcattggtctgtgcaaagcgctcttcgagatcaagccagatttccctcgccgttgatgcatgagaaatactgatatg |
2566 |
T |
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| Q |
207 |
cagtttctgatcagtgga |
224 |
Q |
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| T |
2567 |
cagtttctcatcagtgga |
2584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0532; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 8572 - 8789
Alignment:
| Q |
7 |
agtggctgaagctcacttagttcatcaaaaagacctttgaatttcgtgtagaattctgtgacactgagatcatcttccttctgcattaagcagagcgtac |
106 |
Q |
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| T |
8572 |
agtggttggagctcattaagttcatcatagagagctttgaacttggtgtaaaattcagtcacacttagatcttcctccttctgcattaagcagatcgtgc |
8671 |
T |
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| Q |
107 |
gccatagttgatgaatccttggtgcattggtttgagcgaagcgttcttcgagatcgagccagatgtcccttgcggttgatgcatgtgaaatactgctatg |
206 |
Q |
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| T |
8672 |
gccataattgatggatcctgtgtgcattggtctgtgcaaagcgctcttcgagatcaagccagatttccctcgccgttgatgcatgagaaatactgttatg |
8771 |
T |
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| Q |
207 |
cagtttctgatcagtgga |
224 |
Q |
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| T |
8772 |
cagtttctcatcagtgga |
8789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 33724069 - 33724186
Alignment:
| Q |
106 |
cgccatagttgatgaatccttggtgcattggtttgagcgaagcgttcttcgagatcgagccagatgtcccttgcggttgatgcatgtgaaatactgctat |
205 |
Q |
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| T |
33724069 |
cgccataattgatggatccttggtgtgttggtttgagcaaaacgctcttcgagatcgagccagatgtccctcgctgttgatgcgtgtgaaatgctgctat |
33724168 |
T |
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| Q |
206 |
gcagtttctgatcagtgg |
223 |
Q |
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| T |
33724169 |
gcagtaccggatcagtgg |
33724186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 33797533 - 33797650
Alignment:
| Q |
106 |
cgccatagttgatgaatccttggtgcattggtttgagcgaagcgttcttcgagatcgagccagatgtcccttgcggttgatgcatgtgaaatactgctat |
205 |
Q |
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| T |
33797533 |
cgccataattgatggatccttggtgcgttggtttgagcaaaacgctcttcgagatcgagccagatgtccctcgttgttgatgcgtgtgaaatgctgctat |
33797632 |
T |
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| Q |
206 |
gcagtttctgatcagtgg |
223 |
Q |
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| T |
33797633 |
gcagtaccggatcagtgg |
33797650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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