View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_221 (Length: 248)

Name: NF10233A_low_221
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_221
NF10233A_low_221
[»] chr5 (16 HSPs)
chr5 (20-235)||(31362926-31363141)
chr5 (35-225)||(31313183-31313373)
chr5 (103-225)||(31378643-31378765)
chr5 (103-225)||(31329861-31329983)
chr5 (97-225)||(31279511-31279639)
chr5 (103-225)||(31284654-31284776)
chr5 (97-225)||(31332137-31332264)
chr5 (59-198)||(40843311-40843450)
chr5 (59-201)||(31475929-31476071)
chr5 (103-225)||(31368509-31368631)
chr5 (103-224)||(31288424-31288545)
chr5 (97-225)||(31380922-31381049)
chr5 (97-224)||(31317296-31317423)
chr5 (103-217)||(31643912-31644026)
chr5 (103-231)||(31281364-31281492)
chr5 (59-198)||(31407401-31407540)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 31363141 - 31362926
Alignment:
Q  20 ttgccatatccttggaaataaacctaacacgcaaagggcgaaactgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttg 119  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31363141 ttgccatatccttggaaataaaactaacacgcaaagggcgaaactgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttg 31363042  T
Q  120 aaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcatacatctccaaatttgga 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31363041 aaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcatacatctccaaatttgga 31362942  T
Q  220 atagaacacgtgacat 235  Q
    ||||||||||||||||    
T  31362941 atagaacacgtgacat 31362926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 31313373 - 31313183
Alignment:
Q  35 aaataaacctaacacgcaaagggcgaaactgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttgaaggaagaacttaga 134  Q
    ||||||| ||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31313373 aaataaaactaacacgcaaaggatgaaactgaaaacagtgtaaagagttatcaccaacatggtccatcctccaaatagatagttgaaggaagaacttaga 31313274  T
Q  135 gcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcatacatctccaaatttggaatagaa 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31313273 gcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggcagcatcatacatctccaaatttggaatagaa 31313183  T

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Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 31378765 - 31378643
Alignment:
Q  103 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 202  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  31378765 ctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctccacacctttggctgcatcat 31378666  T
Q  203 acatctccaaatttggaatagaa 225  Q
     ||||||||||||||||||||||    
T  31378665 ccatctccaaatttggaatagaa 31378643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 31329983 - 31329861
Alignment:
Q  103 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 202  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| | |||| |||||||| |||||||||||||||||||||||||||    
T  31329983 ctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagaaaatcccagaaatctccacacctttggctgcatcat 31329884  T
Q  203 acatctccaaatttggaatagaa 225  Q
     ||||||||||||||||||||||    
T  31329883 ccatctccaaatttggaatagaa 31329861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 225
Target Start/End: Original strand, 31279511 - 31279639
Alignment:
Q  97 tccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctg 196  Q
    ||||| ||||||||||||||||||||||||| || |||||||  || | ||||||| ||||||| | |||||| || |||||||||||||| ||||||||    
T  31279511 tccattctccaaagagatagttgaaggaagagctgagagcataacaaaccagtccaacaacaactgaagcaaagcctacaaatctccacacttttggctg 31279610  T
Q  197 catcatacatctccaaatttggaatagaa 225  Q
    |||||  |||||||| ||||||| |||||    
T  31279611 catcaaccatctccatatttggattagaa 31279639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 31284776 - 31284654
Alignment:
Q  103 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 202  Q
    ||||||||||||||||||||||||| ||||||||||  || |||||||||  | ||   | |||||| ||||||||||||||||| ||||||||||||||    
T  31284776 ctccaaagagatagttgaaggaagagcttagagcataacaaagcagtccaatagcagatgaagcaaagcccacaaatctccacacttttggctgcatcat 31284677  T
Q  203 acatctccaaatttggaatagaa 225  Q
     ||||||||  |||||| |||||    
T  31284676 ccatctccatgtttggattagaa 31284654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 225
Target Start/End: Complemental strand, 31332264 - 31332137
Alignment:
Q  97 tccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctg 196  Q
    ||||| |||||||||| |||||||||||||| |||| |||||  || ||||||||| |||||   | |||||| || |||||||||||||||||||||      
T  31332264 tccattctccaaagaggtagttgaaggaagagcttaaagcataacaaagcagtccaacaacagatgaagcaaagccaacaaatctccacacctttggcaa 31332165  T
Q  197 catcatacatctccaaatttggaatagaa 225  Q
    |||||| ||||||| |||||||| |||||    
T  31332164 catcatccatctcc-aatttggattagaa 31332137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 198
Target Start/End: Original strand, 40843311 - 40843450
Alignment:
Q  59 gaaactgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaaca 158  Q
    ||||||||||||||||||||||  ||||  |||||   ||||   |||||| ||||||||||||||||| ||||||||||  || | ||||||| || ||    
T  40843311 gaaactgaaaacagtgtaaagaattatcttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtccaacagca 40843410  T
Q  159 acagcagcaaatcccacaaatctccacacctttggctgca 198  Q
     | | ||||||||||||||||||||| ||||||| |||||    
T  40843411 gctgaagcaaatcccacaaatctccatacctttgtctgca 40843450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 31475929 - 31476071
Alignment:
Q  59 gaaactgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaaca 158  Q
    ||||||||||||||||||||||  ||||  |||||   ||||   |||||| |||||||| |||||||| ||||||||||  || ||||||||| || ||    
T  31475929 gaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaacagca 31476028  T
Q  159 acagcagcaaatcccacaaatctccacacctttggctgcatca 201  Q
     | | |||||| |||||||||||||| ||||||| ||||||||    
T  31476029 gctgaagcaaagcccacaaatctccatacctttgtctgcatca 31476071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 31368631 - 31368509
Alignment:
Q  103 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 202  Q
    |||||||||||||||| |||||||| |||| ||||| ||| |  |||||| ||| |   | |||||| ||||||||||||||||||||||||  ||||||    
T  31368631 ctccaaagagatagttaaaggaagagcttaaagcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccacacctttggcaacatcat 31368532  T
Q  203 acatctccaaatttggaatagaa 225  Q
     ||||||||  |||||| |||||    
T  31368531 ccatctccatgtttggattagaa 31368509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 31288545 - 31288424
Alignment:
Q  103 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 202  Q
    ||||| ||||||| ||||||||||| | |||| |||   ||||||||||| ||||| | | |||||| || |||||||||||||| |||||||||||||     
T  31288545 ctccagagagataattgaaggaagagcatagaccataatagagcagtccaacaacagctgaagcaaagcctacaaatctccacacttttggctgcatcaa 31288446  T
Q  203 acatctccaaatttggaataga 224  Q
     |||||| | ||||||| ||||    
T  31288445 ccatctctatatttggattaga 31288424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 225
Target Start/End: Complemental strand, 31381049 - 31380922
Alignment:
Q  97 tccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctg 196  Q
    ||||| |||||||||| || ||||||||||| || | |||||  || ||||||||| |||||   | |||||| || |||||||||||||||||||||      
T  31381049 tccattctccaaagaggtaattgaaggaagagctcaaagcataacaaagcagtccaacaacagatgaagcaaagccaacaaatctccacacctttggcaa 31380950  T
Q  197 catcatacatctccaaatttggaatagaa 225  Q
    |||||| ||||||| |||||||| |||||    
T  31380949 catcatccatctcc-aatttggattagaa 31380922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 31317423 - 31317296
Alignment:
Q  97 tccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctg 196  Q
    ||||| |||||||||||||||| |||||||| ||||  |||| ||| |  |||||| ||| |   | |||||| ||||||||||||||||||||||||      
T  31317423 tccattctccaaagagatagttaaaggaagagcttaatgcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccacacctttggcaa 31317324  T
Q  197 catcatacatctccaaatttggaataga 224  Q
    |||||| ||||||||  |||||| ||||    
T  31317323 catcatccatctccatgtttggattaga 31317296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 31643912 - 31644026
Alignment:
Q  103 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 202  Q
    ||||||| ||||||||||||||||| || |||||||  || || |||||| ||| |   | |||||| |||||||||||||| |||||||||||||  |     
T  31643912 ctccaaatagatagttgaaggaagagctaagagcataacaaagtagtccaacaatagatgaagcaaagcccacaaatctccatacctttggctgcaagaa 31644011  T
Q  203 acatctccaaatttg 217  Q
     ||||||||||||||    
T  31644012 ccatctccaaatttg 31644026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 231
Target Start/End: Complemental strand, 31281492 - 31281364
Alignment:
Q  103 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 202  Q
    ||||||||||||| ||||||||||| |||| |||||  || || ||||||  |||| | | |||||| || ||||| || ||||| || || |||||||     
T  31281492 ctccaaagagataattgaaggaagagcttaaagcataacaaagaagtccaagaacagctgaagcaaagcctacaaacctgcacactttcgggtgcatcaa 31281393  T
Q  203 acatctccaaatttggaatagaacacgtg 231  Q
     |||||||| ||||||| ||||| |||||    
T  31281392 ccatctccatatttggattagaatacgtg 31281364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 198
Target Start/End: Original strand, 31407401 - 31407540
Alignment:
Q  59 gaaactgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaaca 158  Q
    ||||||||||| ||||||||||  ||||  |||||   ||||   |||||| |||| |||||||||||  || |||||||  ||||||| |||| || ||    
T  31407401 gaaactgaaaagagtgtaaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaacagca 31407500  T
Q  159 acagcagcaaatcccacaaatctccacacctttggctgca 198  Q
     | | |||||| ||||||||||||||||| |||| |||||    
T  31407501 gctgaagcaaagcccacaaatctccacacttttgtctgca 31407540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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