View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_224 (Length: 248)
Name: NF10233A_low_224
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_224 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 2619584 - 2619806
Alignment:
| Q |
22 |
tttttgttaatttgttaagtacaaacactgtcatgaaactaacacagacagatcgatgacacatgtatcaatttgagagaaaatgaatcattttcatgta |
121 |
Q |
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| T |
2619584 |
tttttgttaatttgttaagtacaaacactgtcatgaaactaacacagacagatcaatgacacatgtatcaatttgagagaaaatgaatcattttaatgta |
2619683 |
T |
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| Q |
122 |
atcacatgtgtcgacgacaccgacacatgacaaacactggacacatcttcaatcagacgtgtcggtgctacaaagttgttaattatatattttttcttat |
221 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
2619684 |
atcacatgtgtcgacgacactgacacatgacaaacactggacacgccttcaatcagaagtgtcgatgctacaaagttgttaattatatattttttcctat |
2619783 |
T |
|
| Q |
222 |
gtggcagggctttaggagctggt |
244 |
Q |
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||||||||||||||||||||||| |
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| T |
2619784 |
gtggcagggctttaggagctggt |
2619806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 2585914 - 2586116
Alignment:
| Q |
42 |
acaaacactgtcatgaaactaacacagacagatcgatgacacatgtatcaatttgagagaaaatgaatcattttcatgtaatcacatgtgtcgacg---a |
138 |
Q |
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| T |
2585914 |
acaaacacttacacgaaaataacacagacaaatcgac-acacata-atcaatttgaga--aaatgaatcattttaaagtaatcacatgtgtcagcgtaga |
2586009 |
T |
|
| Q |
139 |
caccgacacatgacaaacactggacacatcttcaatcagacgtgtcggtgctacaaagttgttaattatatat-tttttcttatgtggcagggctttagg |
237 |
Q |
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| T |
2586010 |
cagtgacacgtaacagacactggacacaccattaatcagaagtgtcggttctacaaagttgttgattatatatatttttcttatgtggcagggctttagg |
2586109 |
T |
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| Q |
238 |
agctggt |
244 |
Q |
| |
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||||||| |
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| T |
2586110 |
agctggt |
2586116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 2677842 - 2677774
Alignment:
| Q |
181 |
tgtcggtgctacaaagttgttaattatata-ttttttcttatgtggcagggctttaggagctggtttat |
248 |
Q |
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||||| ||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
2677842 |
tgtcgttgctaaatagttgttaattatataattttttcttatgtggtagggctttaggagctggtttat |
2677774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 2645403 - 2645336
Alignment:
| Q |
181 |
tgtcggtgctacaaagttgttaattatatattttttcttatgtggcagggctttaggagctggtttat |
248 |
Q |
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| T |
2645403 |
tgtcggtgttataatgttgttaattatatatttttccttatgtgacaggactttaggagctgttttat |
2645336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 1412718 - 1412656
Alignment:
| Q |
137 |
gacaccgacacatgacaaacactggacacatcttcaatcagacgtgtcggtgctacaaagttg |
199 |
Q |
| |
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| T |
1412718 |
gacaccgacacatgtcaaacaccggacaaatcttcaattttaagtgtcggtgctgcaaagttg |
1412656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 36398525 - 36398559
Alignment:
| Q |
161 |
gacacatcttcaatcagacgtgtcggtgctacaaa |
195 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
36398525 |
gacacatcttcaatcagaagtgtcggtgctacaaa |
36398559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 16771289 - 16771345
Alignment:
| Q |
137 |
gacaccgacacatgacaaacactggacacatcttcaatcagacgtgtcggtgctaca |
193 |
Q |
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| T |
16771289 |
gacacagacacatgttgaacactggacacaccttcaatcagaagtgtcgatgctaca |
16771345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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