View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_228 (Length: 247)
Name: NF10233A_low_228
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_228 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 20981960 - 20982183
Alignment:
| Q |
6 |
gtttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaactttctt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20981960 |
gtttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaactttctt |
20982059 |
T |
|
| Q |
106 |
cgtcagctgcggcggaatcgttatctcatccgctgaattagacatttggatatatacctagtaatcataaaaggttgaaactgttaaatgtgcttcgatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20982060 |
cgtcagctgcggcggaatcgttatctcatccgctgaattagacatttggatatatacctagtaatcataaaaggttgaaactgttaaatgtgcttcgatc |
20982159 |
T |
|
| Q |
206 |
tcatcccaaaagctagcaacgtag |
229 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
20982160 |
tcatcccaaaagctagcaacgtag |
20982183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 20995120 - 20995330
Alignment:
| Q |
7 |
tttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaactttcttc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20995120 |
tttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaactttcttc |
20995219 |
T |
|
| Q |
107 |
gtcagctgcggcggaatcgttatctcatccgctgaattagacatttggatatatacctagtaatcataaaaggttgaaactgttaaatgtgcttcgatct |
206 |
Q |
| |
|
||| || ||||||||||| | ||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| ||| | |
|
|
| T |
20995220 |
gtcggcggcggcggaatcatgatctcatcctctgaattagacatttgg--atatacctagta---gaaaaaggttgaaaccgttaaatgtgcttggattt |
20995314 |
T |
|
| Q |
207 |
catcccaaaagctagc |
222 |
Q |
| |
|
||| ||||||| |||| |
|
|
| T |
20995315 |
catgccaaaagttagc |
20995330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 20948699 - 20948576
Alignment:
| Q |
19 |
aaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaactttcttcgtcagctgcggc |
118 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| || ||||| |||||||||| ||||| || || ||||||||||| |||||||||| | |||| |
|
|
| T |
20948699 |
aaaggagagaatgtaaaggataacgctttcgggtaaatcactcggtctatcttcgttttcgcaatc---gctgagcttaattttcttcgtcggtggcggt |
20948603 |
T |
|
| Q |
119 |
ggaatcgttatctcatccgctgaatta |
145 |
Q |
| |
|
|||||||||||||| || |||||||| |
|
|
| T |
20948602 |
ggaatcgttatctcgtcatctgaatta |
20948576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 38142201 - 38142268
Alignment:
| Q |
13 |
gttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcac |
80 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| || || ||||| |||||||| ||||||||||||| |
|
|
| T |
38142201 |
gttcaaaaaggagagtatgtgaaggataacacagtcaggtaagtcgctgagtctgtcttcattttcac |
38142268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 7976851 - 7976909
Alignment:
| Q |
5 |
agtttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgag |
63 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| | |||||| ||||| ||||| |
|
|
| T |
7976851 |
agtttggcgttcaaaaaggagagaatgtgaaggataatgcattcgggtaagtcgctgag |
7976909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 3978128 - 3978048
Alignment:
| Q |
8 |
ttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctg |
88 |
Q |
| |
|
|||||||| | ||| ||||| |||||||| |||| ||||| || ||||| |||||||| ||||||||||| | ||||||| |
|
|
| T |
3978128 |
ttggtgtttaaaaacgagagtatgtgaagaataatgctttcaggtaagtcgctgagtctgtcttcattttcgctctcgctg |
3978048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University