View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_230 (Length: 246)
Name: NF10233A_low_230
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_230 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 54216596 - 54216824
Alignment:
| Q |
18 |
catcagtggtgttatttttgcttgtaaatgtccacggtttgtattttaacctaactaactctcgattggttttattttgtagcactcaaattcttattga |
117 |
Q |
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| T |
54216596 |
catcagtggtgttatttttgcttgtaaatgtccacggtttgtattttaacctaactaactctcaattggttttattttgtagcactcaaattcttattga |
54216695 |
T |
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| Q |
118 |
ttgtgaatgtctccataacttgttttcaggttggcatgcttcattttgggtgtcttttcttccactagcagtaagcatctatctagttacagtgcacgca |
217 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54216696 |
ttgtgaatatctctataacttgttttcaggttggcatgcttcattttgggtgtcttttcttccactagcagtaagcatctatctagttacagtgcacgca |
54216795 |
T |
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| Q |
218 |
tgcgtgtgtatgcacatgtttgtttaaaa |
246 |
Q |
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| T |
54216796 |
tgcgtgtgtatgcacatgtttgtttaaaa |
54216824 |
T |
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