View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_231 (Length: 246)
Name: NF10233A_low_231
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_231 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 37058455 - 37058660
Alignment:
| Q |
20 |
cacagacaaagaagccttaatctcattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctccttgc |
119 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058455 |
cacagacaaagaagccttaatcttattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctccttgc |
37058554 |
T |
|
| Q |
120 |
aattggactggtgtcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatataggta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058555 |
aattggactggtgtcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatataggta |
37058654 |
T |
|
| Q |
220 |
acatgt |
225 |
Q |
| |
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|||||| |
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| T |
37058655 |
acatgt |
37058660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 37065933 - 37066138
Alignment:
| Q |
20 |
cacagacaaagaagccttaatctcattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctccttgc |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37065933 |
cacagacaaagaagccttaatcttattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctccttgc |
37066032 |
T |
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| Q |
120 |
aattggactggtgtcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatataggta |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37066033 |
aattggactggtgtcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatataggta |
37066132 |
T |
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| Q |
220 |
acatgt |
225 |
Q |
| |
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|||||| |
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| T |
37066133 |
acatgt |
37066138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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