View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_233 (Length: 246)

Name: NF10233A_low_233
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_233
NF10233A_low_233
[»] chr1 (17 HSPs)
chr1 (5-231)||(3544611-3544837)
chr1 (17-231)||(1248108-1248321)
chr1 (5-129)||(28358396-28358520)
chr1 (24-231)||(5808985-5809192)
chr1 (12-131)||(19014501-19014619)
chr1 (9-139)||(40563072-40563202)
chr1 (9-130)||(52691976-52692097)
chr1 (9-231)||(13867347-13867569)
chr1 (17-131)||(45795710-45795824)
chr1 (24-109)||(3074271-3074356)
chr1 (24-109)||(22191311-22191396)
chr1 (19-89)||(45270787-45270857)
chr1 (24-109)||(21405363-21405448)
chr1 (64-160)||(20987638-20987734)
chr1 (9-71)||(27393463-27393525)
chr1 (197-231)||(45795610-45795644)
chr1 (63-131)||(25504562-25504630)
[»] chr6 (20 HSPs)
chr6 (5-231)||(14843647-14843873)
chr6 (7-130)||(19350449-19350572)
chr6 (9-133)||(32186185-32186309)
chr6 (7-130)||(29976520-29976650)
chr6 (9-181)||(25350676-25350848)
chr6 (21-130)||(14686534-14686643)
chr6 (19-104)||(10362664-10362749)
chr6 (9-133)||(26514226-26514350)
chr6 (24-109)||(29056045-29056130)
chr6 (9-124)||(7956185-7956299)
chr6 (17-90)||(1104469-1104542)
chr6 (5-130)||(13086044-13086169)
chr6 (198-230)||(14686711-14686743)
chr6 (21-72)||(10919990-10920041)
chr6 (19-72)||(900385-900438)
chr6 (63-127)||(11060430-11060494)
chr6 (69-133)||(13938221-13938285)
chr6 (63-131)||(17078758-17078826)
chr6 (63-131)||(18051017-18051085)
chr6 (24-72)||(34434823-34434871)
[»] chr5 (16 HSPs)
chr5 (5-231)||(476617-476843)
chr5 (9-174)||(380362-380527)
chr5 (45-131)||(22176376-22176462)
chr5 (9-131)||(42259784-42259906)
chr5 (11-131)||(42039221-42039341)
chr5 (24-88)||(41590643-41590707)
chr5 (21-88)||(29572398-29572465)
chr5 (21-88)||(29573775-29573842)
chr5 (21-88)||(29575152-29575219)
chr5 (21-88)||(29576529-29576596)
chr5 (21-88)||(29577906-29577973)
chr5 (21-88)||(29579283-29579350)
chr5 (19-88)||(4297833-4297902)
chr5 (12-82)||(15862194-15862264)
chr5 (63-131)||(19513033-19513101)
chr5 (69-133)||(33170160-33170224)
[»] scaffold0043 (1 HSPs)
scaffold0043 (5-231)||(34119-34345)
[»] chr3 (19 HSPs)
chr3 (9-231)||(31675335-31675557)
chr3 (9-231)||(31920865-31921087)
chr3 (7-130)||(19875748-19875871)
chr3 (9-89)||(25024358-25024438)
chr3 (19-104)||(52250648-52250733)
chr3 (9-130)||(55367115-55367236)
chr3 (9-130)||(53941808-53941929)
chr3 (42-130)||(14307713-14307801)
chr3 (9-131)||(40513238-40513360)
chr3 (19-89)||(48930272-48930342)
chr3 (19-88)||(6825369-6825438)
chr3 (50-127)||(35537276-35537353)
chr3 (18-127)||(46190000-46190109)
chr3 (27-109)||(31547897-31547980)
chr3 (197-231)||(34829823-34829857)
chr3 (24-109)||(44888430-44888515)
chr3 (69-133)||(962737-962801)
chr3 (63-131)||(14864033-14864101)
chr3 (71-131)||(34829904-34829964)
[»] chr7 (18 HSPs)
chr7 (7-130)||(27218634-27218757)
chr7 (9-127)||(19544916-19545034)
chr7 (9-131)||(17504073-17504195)
chr7 (9-131)||(17549019-17549141)
chr7 (21-127)||(34103985-34104091)
chr7 (5-174)||(20349425-20349593)
chr7 (21-89)||(11341342-11341410)
chr7 (24-72)||(8752925-8752973)
chr7 (24-104)||(25018847-25018927)
chr7 (24-109)||(17056055-17056140)
chr7 (51-131)||(23887588-23887667)
chr7 (51-131)||(23898764-23898843)
chr7 (24-114)||(22819246-22819336)
chr7 (19-60)||(41805282-41805323)
chr7 (21-72)||(23054497-23054548)
chr7 (6-71)||(20918524-20918589)
chr7 (26-79)||(39658919-39658972)
chr7 (20-72)||(12308647-12308699)
[»] chr4 (15 HSPs)
chr4 (24-231)||(2071944-2072151)
chr4 (9-231)||(43516262-43516484)
chr4 (21-130)||(9690927-9691036)
chr4 (37-127)||(52617407-52617497)
chr4 (13-131)||(7098986-7099104)
chr4 (24-127)||(36183045-36183148)
chr4 (9-127)||(56337014-56337132)
chr4 (19-83)||(38296258-38296322)
chr4 (6-163)||(55725217-55725374)
chr4 (63-131)||(49925835-49925903)
chr4 (24-109)||(9777896-9777981)
chr4 (19-76)||(29328301-29328358)
chr4 (48-89)||(41382519-41382560)
chr4 (9-89)||(2365552-2365632)
chr4 (63-131)||(19114940-19115008)
[»] scaffold0189 (1 HSPs)
scaffold0189 (18-130)||(6593-6705)
[»] chr2 (6 HSPs)
chr2 (24-130)||(6823916-6824022)
chr2 (19-104)||(43310790-43310875)
chr2 (24-131)||(11196855-11196962)
chr2 (19-89)||(26146761-26146831)
chr2 (19-103)||(10689087-10689170)
chr2 (63-131)||(15018181-15018249)
[»] chr8 (14 HSPs)
chr8 (9-133)||(25193590-25193714)
chr8 (24-138)||(29721439-29721553)
chr8 (10-127)||(15439632-15439742)
chr8 (10-127)||(15530936-15531046)
chr8 (24-127)||(37165650-37165753)
chr8 (71-231)||(6245495-6245653)
chr8 (19-88)||(36492928-36492997)
chr8 (22-72)||(12332411-12332461)
chr8 (24-130)||(12341072-12341178)
chr8 (24-130)||(36025026-36025132)
chr8 (6-109)||(18187672-18187775)
chr8 (63-131)||(6901413-6901481)
chr8 (63-127)||(17659339-17659403)
chr8 (63-131)||(36157658-36157726)
[»] scaffold0026 (1 HSPs)
scaffold0026 (21-104)||(67611-67694)
[»] scaffold0061 (1 HSPs)
scaffold0061 (19-89)||(55208-55278)
[»] scaffold0017 (1 HSPs)
scaffold0017 (19-89)||(143356-143426)
[»] scaffold0048 (1 HSPs)
scaffold0048 (20-72)||(63824-63876)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 3544611 - 3544837
Alignment:
Q  5 ggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544611 ggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 3544710  T
Q  105 aaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttact 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544711 aaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttact 3544810  T
Q  205 tttggtatgacaggtggcttggtgatg 231  Q
    |||||||||||||||||||||||||||    
T  3544811 tttggtatgacaggtggcttggtgatg 3544837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 1248108 - 1248321
Alignment:
Q  17 tggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtg 116  Q
    |||||||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  1248108 tggtttttggtataggctgttggtggcgagatatggtgaggaggtagggaggttggaggtagggg-ctggagtacttcatcttggtggagggaagtagtg 1248206  T
Q  117 aagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttacttttggtatgaca 216  Q
    ||||||||||||||| ||||||| | || |||||||||||||| |||| |||| ||||  |||||||| |||||| || |||||||||||||||||||||    
T  1248207 aagattagggatggggtgggtgaagctgcggggagttggtttgaggagagggtgtcgaagagggtagggaatggcttggctacttacttttggtatgaca 1248306  T
Q  217 ggtggcttggtgatg 231  Q
    |||||||||||||||    
T  1248307 ggtggcttggtgatg 1248321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 28358520 - 28358396
Alignment:
Q  5 ggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 104  Q
    |||||||||||  || |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||    
T  28358520 ggtagatagaggcgggttttggtacagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccggagtgtctcatcttggtgg 28358421  T
Q  105 aaggaagtagtgaagattagggatg 129  Q
    | |||||||| ||||||||||||||    
T  28358420 agggaagtagcgaagattagggatg 28358396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 231
Target Start/End: Complemental strand, 5809192 - 5808985
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 123  Q
    ||||||||||| || |||||| | ||||||| | |||  |||||||||||||| ||||||||||||  |||||||| |||| ||||||||||||||||||    
T  5809192 tggtatagggttcttgtagcgcggtatggtgtgaaggttgggaggttggaggttgggggccggagtgtttcatcttagtggcaggaagtagtgaagatta 5809093  T
Q  124 gggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttacttttggtatgacaggtggct 223  Q
    |||||||| | ||||| |  || ||  ||||||| || ||| |||| |||| || ||| ||   |||| |   ||| | |||||||||||||||||||||    
T  5809092 gggatggggtaggtgatgcagatggaggttggttcgcagagagggtgtcgaaaaaggtggggggtggcattagtacattcttttggtatgacaggtggct 5808993  T
Q  224 tggtgatg 231  Q
    ||||||||    
T  5808992 tggtgatg 5808985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 19014501 - 19014619
Alignment:
Q  12 agagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaag 111  Q
    |||| ||| |||||||||   ||| |||| |||||||||||||||||| ||||||||||||||||  |||||||||||  ||| |||||||||| |||      
T  19014501 agaggtgggttttggtattaagtgttggtggcgagatatggtgaggagacagggaggttggaggt-tggggccggagtgtttcttcttggtggagggaga 19014599  T
Q  112 tagtgaagattagggatggg 131  Q
    ||||||||||||||||||||    
T  19014600 tagtgaagattagggatggg 19014619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 40563072 - 40563202
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    |||||||| || || |||||||| ||  |||| ||||||||||| || ||||||| |||||||||||| |||||||||| |  ||||||||||||||  |    
T  40563072 gatagagacgggttgtggtatagagttttggtggcgagatatggagatgaggcagagaggttggaggttgggggccggactgtttcatcttggtggagag 40563171  T
Q  109 aagtagtgaagattagggatgggatgggtga 139  Q
    |  ||| |||||||||||||||  |||||||    
T  40563172 agatagcgaagattagggatggagtgggtga 40563202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 52692097 - 52691976
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    |||||||| || || |||||||||||| |||| ||| | |||||||||||||| |||||||||| ||||| ||| ||||||  ||| |||||||||| ||    
T  52692097 gatagagaggggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagagggtcggagtgattcttcttggtggaggg 52691998  T
Q  109 aagtagtgaagattagggatgg 130  Q
    |  ||| |||||||| ||||||    
T  52691997 agatagcgaagattaaggatgg 52691976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 13867347 - 13867569
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    ||||||| |||||| ||||||||||| ||||||||  | |||||||||  ||| ||| |||||||||| |||||| |||||  |||||| ||||||        
T  13867347 gatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcaggagtgtttcatcgtggtggcgaa 13867446  T
Q  109 aagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttacttttg 208  Q
    || |||  ||||||||||||||| | || || |  |||||| | |||||||| ||| |||| ||||  |  |||||  ||||      ||||||||||||    
T  13867447 aaatagcaaagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggttctagtacttacttttg 13867546  T
Q  209 gtatgacaggtggcttggtgatg 231  Q
    |||||||||||||||||||||||    
T  13867547 gtatgacaggtggcttggtgatg 13867569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 45795824 - 45795710
Alignment:
Q  17 tggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtg 116  Q
    |||||| ||||||| ||| ||||||||  | |||||||||  ||  ||| |||||||||| |||||| |||||  |||||||||||||  |||||||| |    
T  45795824 tggtttatggtataaggtcctggtagcacggtatggtgagacggttgggcggttggaggttgggggcaggagtgtttcatcttggtggcgggaagtagcg 45795725  T
Q  117 aagattagggatggg 131  Q
    |||||||||||||||    
T  45795724 aagattagggatggg 45795710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 3074356 - 3074271
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 109  Q
    |||||||||||| |||||||| | |||||||||||||  |||||||||| ||| |||| |||||||  ||| || |||||||||||    
T  3074356 tggtatagggtgttggtagcgcgttatggtgaggaggatgggaggttggcggttggggaccggagtgtttcttcgtggtggaagga 3074271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 22191311 - 22191396
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 109  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| ||||||||||||  ||| || |||||||||||    
T  22191311 tggtatagggtgttggtggcgtgttatggtgaggaggatgggaggttggtggttgggggccggagtgtttcttcgtggtggaagga 22191396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 45270857 - 45270787
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 89  Q
    |||| ||||||||| |  |||| |||||||||| ||||||||  |||||||||||||| ||||||||||||    
T  45270857 gtttatggtataggattttggtggcgagatatgatgaggaggatgggaggttggaggttgggggccggagt 45270787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 21405448 - 21405363
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 109  Q
    |||||||||||| |||||||  | |||||||||||||  |||||||||| ||| ||||||| ||||  ||| || |||||||||||    
T  21405448 tggtatagggtgttggtagcacgttatggtgaggaggatgggaggttggtggttgggggccagagtgtttcttcgtggtggaagga 21405363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 20987734 - 20987638
Alignment:
Q  64 ggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgc 160  Q
    |||||||||||||||||||| |||||  |||   |||||||| |||  ||| |||||||||||||||||| || ||   ||||| ||||||||||||    
T  20987734 ggaggttggaggtagggggcaggagtggttctctttggtggagggagatagcgaagattagggatgggataggcgattctgaggagagttggtttgc 20987638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 27393463 - 27393525
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttg 71  Q
    |||||||  ||||| ||||||| |||| |||| || || ||||||||||||||||||||||||    
T  27393463 gatagaggaggtttatggtatatggtgttggttgctaggtatggtgaggaggcagggaggttg 27393525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 45795644 - 45795610
Alignment:
Q  197 tacttacttttggtatgacaggtggcttggtgatg 231  Q
    ||||||||||||||||||||||||||| |||||||    
T  45795644 tacttacttttggtatgacaggtggctaggtgatg 45795610  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 25504562 - 25504630
Alignment:
Q  63 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||| ||||||| ||||  ||| |||||||||  ||| || | ||||||||||||||||    
T  25504562 gggaggttggaggttgggggccagagttgttcttcttggtggcgggaggttgggaagattagggatggg 25504630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 14843647 - 14843873
Alignment:
Q  5 ggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  14843647 ggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggaggtagggggacggagtacttcatcttggtgg 14843746  T
Q  105 aaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttact 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14843747 aaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttact 14843846  T
Q  205 tttggtatgacaggtggcttggtgatg 231  Q
    |||||||||||||||||||||||||||    
T  14843847 tttggtatgacaggtggcttggtgatg 14843873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 19350572 - 19350449
Alignment:
Q  7 tagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaa 106  Q
    ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  19350572 tagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccggagtgtatcatcttggtggaa 19350473  T
Q  107 ggaagtagtgaagattagggatgg 130  Q
    ||| |||| |||||||||||||||    
T  19350472 ggaggtagcgaagattagggatgg 19350449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 32186309 - 32186185
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    ||||||| ||| ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||||| |||||||||||| |||| |||||||||| ||    
T  32186309 gatagaggtgggttttggtatagggtgttggtggcgagatatagtgaggtggctgggaggttggaggttgggggccggagtgcttcttcttggtggaggg 32186210  T
Q  109 aagtagtgaagattagggatgggat 133  Q
    | |||||||||||||||||||||||    
T  32186209 aggtagtgaagattagggatgggat 32186185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 29976520 - 29976650
Alignment:
Q  7 tagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgga-------ggtagggggccggagtacttcatctt 99  Q
    ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||       ||| ||||||||||||   |||||||    
T  29976520 tagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggttgggggccggagtgtatcatctt 29976619  T
Q  100 ggtggaaggaagtagtgaagattagggatgg 130  Q
    |||||||||| |||| |||||||||||||||    
T  29976620 ggtggaaggaggtagcgaagattagggatgg 29976650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 25350848 - 25350676
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    ||||||||||| || |||||||||||| |||| ||| | |||||||||||||| |||||||||| ||||||||||||||||  ||| | ||||| || ||    
T  25350848 gatagagatgggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccggagtgattctttttggttgaggg 25350749  T
Q  109 aagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggt 181  Q
    |  ||| ||||||||||||||| || || |||   || ||| |||||||||| ||| |||| |||| ||||||    
T  25350748 agatagcgaagattagggatggaataggagacacggatgggggttggtttgcagagagggtgtcgaaaagggt 25350676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 14686534 - 14686643
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaaga 120  Q
    |||||||||||||| ||||||||| | ||||| |||  ||  ||| |||||||||||||||||||||||  ||||||||||||||  ||||||| |||||    
T  14686534 ttttggtatagggtcctggtagcgcggtatggggagacggttgggcggttggaggtagggggccggagtgtttcatcttggtggagagaagtagcgaaga 14686633  T
Q  121 ttagggatgg 130  Q
    ||||||||||    
T  14686634 ttagggatgg 14686643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 10362749 - 10362664
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 104  Q
    |||| |||||||||||  |||| |||||||||||||||||||  |||||||||||||| ||||||||||||  ||| |||||||||    
T  10362749 gtttatggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggtggggggccggagtggttcttcttggtgg 10362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 26514350 - 26514226
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    |||||||| || || |||||||| ||| |||| ||  | |||||||||||||||||||| |||||||| ||||||||||||  |||   |||||||| ||    
T  26514350 gatagagaggggttctggtatagagtgttggtggctcggtatggtgaggaggcagggagtttggaggttgggggccggagtggttctatttggtggaggg 26514251  T
Q  109 aagtagtgaagattagggatgggat 133  Q
    |  ||| ||||||||||||||||||    
T  26514250 agatagcgaagattagggatgggat 26514226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 29056130 - 29056045
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 109  Q
    |||||||||||| |||||||  | |||||||||||||  |||||||||| ||| ||||||||||||  ||| || |||||||||||    
T  29056130 tggtatagggtgttggtagcacgttatggtgaggaggatgggaggttggcggttgggggccggagtgtttcttcgtggtggaagga 29056045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 7956185 - 7956299
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    |||||||||||| |||||||| | ||| |||| || ||||||||||||||||  ||||||||||||| | | |||||||||  ||| |  |||||||||     
T  7956185 gatagagatggtctttggtatcgagtgttggtggctagatatggtgaggaggacgggaggttggagg-atgaggccggagtggttctttatggtggaaga 7956283  T
Q  109 aagtagtgaagattag 124  Q
    | || |||||||||||    
T  7956284 aggttgtgaagattag 7956299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 1104469 - 1104542
Alignment:
Q  17 tggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagta 90  Q
    |||||| |||||||||||| |||| ||  | |||||||||||||||| |||||||| ||| ||||||| |||||    
T  1104469 tggtttgtggtatagggtgatggttgctcgttatggtgaggaggcagtgaggttggtggttgggggcctgagta 1104542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 13086169 - 13086044
Alignment:
Q  5 ggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 104  Q
    |||||||||||  ||||| |||||||| || || || ||  | ||||| ||||  | ||||||||||||||| ||||||||||||  ||| | |||||||    
T  13086169 ggtagatagagtaggtttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagttgttctttttggtgg 13086070  T
Q  105 aaggaagtagtgaagattagggatgg 130  Q
    ||||| |||| || |||||| |||||    
T  13086069 aaggaggtagggaggattagagatgg 13086044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 14686711 - 14686743
Alignment:
Q  198 acttacttttggtatgacaggtggcttggtgat 230  Q
    |||||||||||||||||||||||||||||||||    
T  14686711 acttacttttggtatgacaggtggcttggtgat 14686743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 10919990 - 10920041
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 72  Q
    ||||||||||||||| |||| || || |||||||||||||| ||||||||||    
T  10919990 ttttggtatagggtgttggttgctaggtatggtgaggaggcggggaggttgg 10920041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 900385 - 900438
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 72  Q
    ||||||||||||||||| |||  || || || ||||||||||||||||||||||    
T  900385 gtttttggtatagggtgttggctgctaggtacggtgaggaggcagggaggttgg 900438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 11060430 - 11060494
Alignment:
Q  63 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 127  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||||||    
T  11060430 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattaggga 11060494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 13938285 - 13938221
Alignment:
Q  69 ttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggat 133  Q
    |||||||  ||||||||||||  ||||||||||||| ||||  |||||| |||||| ||||||||    
T  13938285 ttggaggatgggggccggagttgttcatcttggtggcaggagatagtgaggattagagatgggat 13938221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 17078758 - 17078826
Alignment:
Q  63 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||| ||||||    
T  17078758 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagagatggg 17078826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 18051017 - 18051085
Alignment:
Q  63 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||| ||||||    
T  18051017 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagagatggg 18051085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 34434871 - 34434823
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 72  Q
    |||||||||||  |||| |||||||||||||||||||  ||||||||||    
T  34434871 tggtatagggttttggtggcgagatatggtgaggaggatgggaggttgg 34434823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 476843 - 476617
Alignment:
Q  5 ggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476843 ggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 476744  T
Q  105 aaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttact 204  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476743 aaggaagtagtgaagattagggacgggatgggtgacgctgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttact 476644  T
Q  205 tttggtatgacaggtggcttggtgatg 231  Q
    |||||||||||||||||||||||||||    
T  476643 tttggtatgacaggtggcttggtgatg 476617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 380527 - 380362
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    |||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||| ||||||||||||  ||| ||||||| |||||    
T  380527 gatagagatggtttctggtatagggtgctggaagcgcggtatggtgaggaggcagggaggttggaggttgggggccggagtggttcttcttggtagaagg 380428  T
Q  109 aagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcga 174  Q
    || |||||||||||||||| ||| | || || | ||||||| | |||||||||||| |||| ||||    
T  380427 aaatagtgaagattagggacgggttaggagaaggtgaggggggctggtttgcggagagggtgtcga 380362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 22176376 - 22176462
Alignment:
Q  45 agatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||   || ||||||||||||||| ||| ||||||||||||||||    
T  22176376 agatatggtgaggaggcagggaggttggcggttgggggccggagtgtctcttcttggtggaaggaaatagcgaagattagggatggg 22176462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 42259906 - 42259784
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    ||||||| ||| |||||||||| |||| | || | ||||||| |||||| ||| ||||| |||||||| ||| |||||||| |||| |||||||||| ||    
T  42259906 gatagaggtgggttttggtataaggtgtttgtggagagatatcgtgaggtggctgggagtttggaggttgggagccggagtgcttcttcttggtggaggg 42259807  T
Q  109 aagtagtgaagattagggatggg 131  Q
    | |||||||||||||||||||||    
T  42259806 aggtagtgaagattagggatggg 42259784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 42039221 - 42039341
Alignment:
Q  11 tagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaa 110  Q
    ||||| ||| ||||||||||||||| |||| |||| ||||||||||| ||  ||| |||||||||  |||||||||||| |||  |||||||||| |||     
T  42039221 tagaggtgggttttggtatagggtgttggtggcgaaatatggtgaggtggttgggcggttggaggatgggggccggagtgctttttcttggtggagggag 42039320  T
Q  111 gtagtgaagattagggatggg 131  Q
     || |||||||||||||||||    
T  42039321 ttaatgaagattagggatggg 42039341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 41590707 - 41590643
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 88  Q
    |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| |||||||||||    
T  41590707 tggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggag 41590643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 29572398 - 29572465
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 88  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29572398 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29572465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 29573775 - 29573842
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 88  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29573775 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29573842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 29575152 - 29575219
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 88  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29575152 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29575219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 29576529 - 29576596
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 88  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29576529 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29576596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 29577906 - 29577973
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 88  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29577906 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29577973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 29579283 - 29579350
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 88  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29579283 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29579350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 4297833 - 4297902
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 88  Q
    |||| |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| |||| ||||||    
T  4297833 gtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttggggcccggag 4297902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 15862194 - 15862264
Alignment:
Q  12 agagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggg 82  Q
    |||||||| ||||||||||||||| || | || || |||||||| ||||| ||| |||||||||| |||||    
T  15862194 agagatgggttttggtatagggtgttgattgctaggtatggtgaagaggctgggcggttggaggttggggg 15862264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 19513033 - 19513101
Alignment:
Q  63 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| || |||| | ||||||    
T  19513033 gggaggttggaggtggggggccggagttgttcttcttggtggagggaggtagggaggattcgagatggg 19513101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 33170224 - 33170160
Alignment:
Q  69 ttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggat 133  Q
    |||||||  ||||||||||||  |||||||||||||  |||  |||||| |||||||||||||||    
T  33170224 ttggaggatgggggccggagttgttcatcttggtggcgggagatagtgaggattagggatgggat 33170160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 34119 - 34345
Alignment:
Q  5 ggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34119 ggtagagagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggaggtagggggccggagtacttcatcttggtgg 34218  T
Q  105 aaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttact 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  34219 aaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagaataggtaatggcgtgtctacttact 34318  T
Q  205 tttggtatgacaggtggcttggtgatg 231  Q
    |||||||||||||||||||||||||||    
T  34319 tttggtatgacaggtggcttggtgatg 34345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 31675557 - 31675335
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31675557 gatagaggtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 31675458  T
Q  109 aagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttacttttg 208  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||| | |||||||||||||| |||||||||||||||    
T  31675457 aagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagcgggtttcgaggaaggtaggtaatggcgcgtctacttacttttg 31675358  T
Q  209 gtatgacaggtggcttggtgatg 231  Q
    |||||| ||||||||||||||||    
T  31675357 gtatgataggtggcttggtgatg 31675335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 31920865 - 31921087
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31920865 gatagaggtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtagaagg 31920964  T
Q  109 aagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttacttttg 208  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||| |||||||||| | |||||||||||||| |||||||||||||||    
T  31920965 aagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagtgggtttcgaggaaggtaggtaatggcgcgtctacttacttttg 31921064  T
Q  209 gtatgacaggtggcttggtgatg 231  Q
    |||||| ||||||||||||||||    
T  31921065 gtatgataggtggcttggtgatg 31921087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 19875871 - 19875748
Alignment:
Q  7 tagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaa 106  Q
    ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||   ||||||||||||||    
T  19875871 tagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcaaggaggttggaggttgggggccggagtgtatcatcttggtggaa 19875772  T
Q  107 ggaagtagtgaagattagggatgg 130  Q
    ||| |||| |||||||| ||||||    
T  19875771 ggaggtagcgaagattaaggatgg 19875748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 25024358 - 25024438
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 89  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||| ||||| ||||||    
T  25024358 gatagagatggtttttggtatagggtgttggaagctagatatggtgaggaggcagggaggttggcggttgggggtcggagt 25024438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 52250648 - 52250733
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 104  Q
    |||| |||||||||||| |||| |||||||||||||||||||  |||||||||||||| ||||||||||||  ||| |||||||||    
T  52250648 gtttatggtatagggtgttggtggcgagatatggtgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 52250733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 55367236 - 55367115
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    ||||||| ||| || ||||||| |||  || |||||||||||||||||||||||| |||||||||||||||||||||||||  ||| | |||||||| ||    
T  55367236 gatagaggtgggttgtggtataaggttttgttagcgagatatggtgaggaggcagagaggttggaggtagggggccggagtgattccttttggtggatgg 55367137  T
Q  109 aagtagtgaagattagggatgg 130  Q
    |  ||  ||||||||| |||||    
T  55367136 agataacgaagattagagatgg 55367115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 53941929 - 53941808
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    |||||||| || || ||||||| |||| |||| ||| | |||||||||||||| |||||||||| ||||||||||||||||  ||| | || ||||| ||    
T  53941929 gatagagaggggttctggtataaggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccggagtgattctttttagtggaggg 53941830  T
Q  109 aagtagtgaagattagggatgg 130  Q
    |  ||| |||||||||||||||    
T  53941829 agatagcgaagattagggatgg 53941808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 14307801 - 14307713
Alignment:
Q  42 gcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgg 130  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||   ||| ||||||||| |||  ||| |||||||||||||||    
T  14307801 gcgagatatggtgaggaggcagggagattggagtttgggggccggagtgtgtcaccttggtggagggagatagcgaagattagggatgg 14307713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 40513238 - 40513360
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    ||||||| |||||| ||||||||||| ||||||||  | |||||||||  ||| ||| |||||||||| |||||| |||||  |||| | ||||||  ||    
T  40513238 gatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcaggagtgtttcaccgtggtggcggg 40513337  T
Q  109 aagtagtgaagattagggatggg 131  Q
    || |||  |||||||||||||||    
T  40513338 aattagcaaagattagggatggg 40513360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 48930342 - 48930272
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 89  Q
    |||| |||||||||||  |||| |||||||||||||||||||  |||||||||||||| |||||| |||||    
T  48930342 gtttatggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggttgggggctggagt 48930272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 6825438 - 6825369
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 88  Q
    |||| |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| |||||||||||    
T  6825438 gtttatggtatagggtgttggtggcgcggtatggtgaggaggatgggaggttggcggttgggggccggag 6825369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 35537353 - 35537276
Alignment:
Q  50 tggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 127  Q
    ||||||||||||| |||| |||||||| ||||||||||||  ||| | |||||||| ||| || |||| |||||||||    
T  35537353 tggtgaggaggcaaggagattggaggttgggggccggagtgattcttattggtggagggaggtggtgaggattaggga 35537276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 46190109 - 46190000
Alignment:
Q  18 ggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtga 117  Q
    ||||| ||||| |||||  |||| ||||| |||||||||||||| | | |||||||||| ||||||||||||  |||   ||| |||| ||| |||| ||    
T  46190109 ggtttgtggtacagggtattggtggcgaggtatggtgaggaggctgagcggttggaggttgggggccggagtgtttctaattgatggagggaggtagcga 46190010  T
Q  118 agattaggga 127  Q
    ||||||||||    
T  46190009 agattaggga 46190000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 31547980 - 31547897
Alignment:
Q  27 tatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-tagggggccggagtacttcatcttggtggaagga 109  Q
    ||||||||| |||||||| | |||||||||||||  |||||||||| || | ||||||||||||  ||| || |||||||||||    
T  31547980 tatagggtgttggtagcgcgttatggtgaggaggatgggaggttggtggttggggggccggagtgtttcttcgtggtggaagga 31547897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 34829857 - 34829823
Alignment:
Q  197 tacttacttttggtatgacaggtggcttggtgatg 231  Q
    ||||| |||||||||||||||||||||||||||||    
T  34829857 tactttcttttggtatgacaggtggcttggtgatg 34829823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 44888515 - 44888430
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 109  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| | ||| ||||||  ||| || |||||||||||    
T  44888515 tggtatagggtgttggtggcgcgttatggtgaggaggatgggaggttggtggttgagggtcggagtgtttcttcgtggtggaagga 44888430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 962737 - 962801
Alignment:
Q  69 ttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggat 133  Q
    |||||||  ||||| ||||||  |||||||||||||| |||  |||||| |||||||||||||||    
T  962737 ttggaggatgggggtcggagttgttcatcttggtggagggagatagtgaggattagggatgggat 962801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 14864033 - 14864101
Alignment:
Q  63 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| || |||| | ||||||    
T  14864033 gggaggttggaggtggggggccggagttgttcttcttggtggagggaggtagggaggattcgagatggg 14864101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 34829964 - 34829904
Alignment:
Q  71 ggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||| |||| |||||||  |||||||||||||   ||||||| ||||||||||||||||    
T  34829964 ggaggttggggcccggagtgtttcatcttggtggtgtgaagtagcgaagattagggatggg 34829904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 27218634 - 27218757
Alignment:
Q  7 tagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaa 106  Q
    ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||   ||||||||||||||    
T  27218634 tagatagaggtggattttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggcggttgggggccggagtgtatcatcttggtggaa 27218733  T
Q  107 ggaagtagtgaagattagggatgg 130  Q
    ||| |||| |||||||||||||||    
T  27218734 ggaggtagcgaagattagggatgg 27218757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 19544916 - 19545034
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    ||||||||||| ||||||||||||||| |||   |  |||||||||||||||||| |||||||||||| ||||||||||||  ||| |  ||||||||||    
T  19544916 gatagagatgggttttggtatagggtgttggcgacacgatatggtgaggaggcagagaggttggaggttgggggccggagtggttctttgtggtggaagg 19545015  T
Q  109 aagtagtgaagattaggga 127  Q
    |  ||||||||||||||||    
T  19545016 atctagtgaagattaggga 19545034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 17504073 - 17504195
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    |||||||||||| |||||||| | ||| |||| |||||||| ||||||||||  |||||||||||||  ||||||||||||  ||| |  ||||||||||    
T  17504073 gatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccggagtggttctttgtggtggaagg 17504172  T
Q  109 aagtagtgaagattagggatggg 131  Q
    | ||  |||||||||| ||||||    
T  17504173 aggttatgaagattagagatggg 17504195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 17549141 - 17549019
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    |||||||||||| |||||||| | ||| |||| |||||||| ||||||||||  |||||||||||||  ||||||||||||  ||| |  ||||||||||    
T  17549141 gatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccggagtggttctttgtggtggaagg 17549042  T
Q  109 aagtagtgaagattagggatggg 131  Q
    | ||  |||||||||| ||||||    
T  17549041 aggttatgaagattagagatggg 17549019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 34104091 - 34103985
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaaga 120  Q
    ||||||||||||||| |||| ||| | || |||||||||||| ||||||||||||  |||||| |||||  ||| | ||||||||||||  |||||||||    
T  34104091 ttttggtatagggtgttggtggcgcgttacggtgaggaggcaaggaggttggaggatgggggctggagtggttcttgttggtggaaggatttagtgaaga 34103992  T
Q  121 ttaggga 127  Q
    |||||||    
T  34103991 ttaggga 34103985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 20349593 - 20349425
Alignment:
Q  5 ggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 104  Q
    ||||||||||||  | || |||||||||||| |||| ||  | |||||||||||||||||||||||||||||||||| | |||||  |||   |||||||    
T  20349593 ggtagatagagaaaggttatggtatagggtgttggtggctcggtatggtgaggaggcagggaggttggaggtagggg-caggagtggttctctttggtgg 20349495  T
Q  105 aaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcga 174  Q
    | |||  ||| |||||||||||||||||| || ||   ||||| | |||||||||| ||| |||| ||||    
T  20349494 agggagatagcgaagattagggatgggataggcgattctgaggagggttggtttgcagagagggtgtcga 20349425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 11341410 - 11341342
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 89  Q
    ||||||||||||||| |||  || || ||||||||||||||||||||||||||||| ||||||||||||    
T  11341410 ttttggtatagggtgttggctgctaggtatggtgaggaggcagggaggttggaggtcgggggccggagt 11341342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 8752925 - 8752973
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 72  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  8752925 tggtatagggtgctggtggcgagatatggtgaggaggctgggaggttgg 8752973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 25018847 - 25018927
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 104  Q
    |||||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||| || |||  ||| |||||||||    
T  25018847 tggtatagggtgttggtggcaagatatggtgaggaggctgggaggttggaggttgggggtcgaagtggttcttcttggtgg 25018927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 17056140 - 17056055
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 109  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| ||||||||||||  ||| || |||||||||||    
T  17056140 tggtatagggtgttggtggcgcgttatggtgaggaggatgggaggttggtggttgggggccggagtgtttcttcgtggtggaagga 17056055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 23887667 - 23887588
Alignment:
Q  51 ggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||| ||||||||||| ||||| ||||||  ||| |||||||||| |||  ||| ||||||||||||||||    
T  23887667 ggtgaggaggcagg-aggttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagattagggatggg 23887588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 23898843 - 23898764
Alignment:
Q  51 ggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||| ||||||||||| ||||| ||||||  ||| |||||||||| |||  ||| ||||||||||||||||    
T  23898843 ggtgaggaggcagg-aggttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagattagggatggg 23898764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 22819246 - 22819336
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtag 114  Q
    |||||||||||| |||||||| | |||||||||||||   ||||||||| ||| ||||||||||||  ||| |  ||||||||||| ||||    
T  22819246 tggtatagggtgttggtagcgcgttatggtgaggaggacaggaggttggcggttgggggccggagtgtttctttgtggtggaaggaggtag 22819336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 41805282 - 41805323
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggagg 60  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  41805282 gtttttggtatagggtgttggtggcgagatatggtgaggagg 41805323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 23054497 - 23054548
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 72  Q
    ||||||||||||||| |||  || ||| ||||||||||||||||||||||||    
T  23054497 ttttggtatagggtgttggcggctagacatggtgaggaggcagggaggttgg 23054548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 20918589 - 20918524
Alignment:
Q  6 gtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttg 71  Q
    ||||||||||  ||||| |||||||||||||| ||| |  | ||||||||| ||||||||||||||    
T  20918589 gtagatagaggaggtttgtggtatagggtgctagtaactcgttatggtgagaaggcagggaggttg 20918524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 39658919 - 39658972
Alignment:
Q  26 gtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagg 79  Q
    |||||||||| |||| ||| | |||||||||||||| |||||||||| ||||||    
T  39658919 gtatagggtgttggtggcgcggtatggtgaggaggctgggaggttgggggtagg 39658972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 12308647 - 12308699
Alignment:
Q  20 tttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 72  Q
    |||||||||||||||| |||  || || ||||||||||||||| |||||||||    
T  12308647 tttttggtatagggtgttggctgcaaggtatggtgaggaggcatggaggttgg 12308699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 231
Target Start/End: Complemental strand, 2072151 - 2071944
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 123  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||| ||||||  ||| |  ||||||| |||  ||||||||||||    
T  2072151 tggtatagggtgctggtggcgagatatggtgaggaggcaaggaggttagaggttgggggacggagtgtttcttgctggtggagggagttagtgaagatta 2072052  T
Q  124 gggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttacttttggtatgacaggtggct 223  Q
    |||| ||| | ||||| |  |||||| | |||||||| ||| |||| ||||||| ||||||  ||||  |   |||||||||||||| |||||||||| |    
T  2072051 gggacggggtaggtgaggccgaggggggctggtttgcagagagggtgtcgagaaaggtaggggatggtttacatacttacttttggtctgacaggtgggt 2071952  T
Q  224 tggtgatg 231  Q
    ||||||||    
T  2071951 tggtgatg 2071944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 43516262 - 43516484
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    ||||||| |||||| ||||||||||| || |||| | | |||||||||  ||| ||| |||||||||| |||||| |||||  |||||||||||||  ||    
T  43516262 gatagaggtggtttatggtatagggtcctagtagtgcggtatggtgagacggctgggcggttggaggttgggggcaggagtgtttcatcttggtggcggg 43516361  T
Q  109 aagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttacttttg 208  Q
    |||||| |||||||||||||||| | || || |  |||||| | |||||||| ||| |||| |||| ||  |||||  |||||     ||||||||||||    
T  43516362 aagtagcgaagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaaaaaagtaggagatggctctagtacttacttttg 43516461  T
Q  209 gtatgacaggtggcttggtgatg 231  Q
    |||||||| ||||||||||||||    
T  43516462 gtatgacaagtggcttggtgatg 43516484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 9691036 - 9690927
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaaga 120  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||  |||   |||||||| |||  ||| |||||    
T  9691036 ttttggtatagggtgctagtagctagatatggtgaggaggctgggaggttggaggttgggggccggagtgtttctcattggtggagggagatagcgaaga 9690937  T
Q  121 ttagggatgg 130  Q
    ||||||||||    
T  9690936 ttagggatgg 9690927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 52617407 - 52617497
Alignment:
Q  37 tggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 127  Q
    |||| |||||||||||||||||||||| ||||||||||||  | |||||||||  |||||||||||||| |||  ||| ||||||||||||    
T  52617407 tggtggcgagatatggtgaggaggcagagaggttggaggttagaggccggagtgtttcatcttggtggagggagatagcgaagattaggga 52617497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 7099104 - 7098986
Alignment:
Q  13 gagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagt 112  Q
    |||| ||||| |||||| ||||  || |||| ||||||||||||||||  | |||||||||||  ||||||||||||  |||   |||||||||||| ||    
T  7099104 gagagggtttgtggtatcgggttttgatagctagatatggtgaggaggatgagaggttggaggatgggggccggagtggttctatttggtggaaggaggt 7099005  T
Q  113 agtgaagattagggatggg 131  Q
     ||||||||||||||||||    
T  7099004 tgtgaagattagggatggg 7098986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 36183148 - 36183045
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 123  Q
    ||||||||||| || || || ||||||||||||||||  ||| |||||||||| ||||||||||||  |||  ||||||||| |||  ||| ||||||||    
T  36183148 tggtatagggtacttgtggcaagatatggtgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagatta 36183049  T
Q  124 ggga 127  Q
    ||||    
T  36183048 ggga 36183045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 56337014 - 56337132
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    |||||||  ||||| ||||||||||| || |  ||||| |||||||||||||| ||| |||||||||| ||||| ||||||  |||  ||||||||| ||    
T  56337014 gatagagtaggtttgtggtatagggtactagcggcgaggtatggtgaggaggctgggcggttggaggttgggggtcggagtgtttctacttggtggaggg 56337113  T
Q  109 aagtagtgaagattaggga 127  Q
    |  ||| ||||||||||||    
T  56337114 agatagcgaagattaggga 56337132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 38296322 - 38296258
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 83  Q
    ||||||||||||||||| |||| |||||||||||||||| |   |||||||||||||| ||||||    
T  38296322 gtttttggtatagggtgttggtggcgagatatggtgaggtgaatgggaggttggaggttgggggc 38296258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 55725217 - 55725374
Alignment:
Q  6 gtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgga 105  Q
    |||||||||||||| || |||||||||||| |||| || || ||||||| |||||  ||  | |||||||  ||||||||||||  ||| ||||||||||    
T  55725217 gtagatagagatggattatggtatagggtgttggtggctaggtatggtgtggaggatggtggtttggaggatgggggccggagttgttcttcttggtgga 55725316  T
Q  106 aggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcgga 163  Q
     |||  |||| | ||| || |||||||| || || | || || | |||||||||||||    
T  55725317 gggagatagtcatgatcagagatgggataggcgagggtggggagggttggtttgcgga 55725374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 49925835 - 49925903
Alignment:
Q  63 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||| ||||||||||||  ||| |||||||||  ||| || | ||||||||||||||||    
T  49925835 gggaggttggaggttgggggccggagttgttcttcttggtggcgggaggtggggaagattagggatggg 49925903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 9777981 - 9777896
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 109  Q
    |||||||||||| |||||||| | ||| |||||||||  |||||||||  ||| ||||||||||||  ||| |  |||||||||||    
T  9777981 tggtatagggtgttggtagcgcgttatagtgaggaggatgggaggttgacggttgggggccggagtgtttctttgtggtggaagga 9777896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 29328301 - 29328358
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggt 76  Q
    |||||||||||| |||  |||| ||||| |||||||||||||  ||||||||||||||    
T  29328301 gtttttggtataaggtcttggtcgcgaggtatggtgaggaggtggggaggttggaggt 29328358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 41382560 - 41382519
Alignment:
Q  48 tatggtgaggaggcagggaggttggaggtagggggccggagt 89  Q
    |||||||||||||| ||| |||||||||| ||||||||||||    
T  41382560 tatggtgaggaggctgggcggttggaggttgggggccggagt 41382519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 2365632 - 2365552
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 89  Q
    |||||||  ||||| |||||||||||| |||| ||  | ||||||||||||| |||||||||| |||  ||||| ||||||    
T  2365632 gatagaggaggtttatggtatagggtgttggttgctcgttatggtgaggaggtagggaggttgaaggatgggggtcggagt 2365552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 19115008 - 19114940
Alignment:
Q  63 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||| ||||||| ||||  ||| |||||||||  ||| |||| || |||||||||||||    
T  19115008 gggaggttggaggttgggggccagagttgttcttcttggtggcgggaggtagggaggattagggatggg 19114940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 6705 - 6593
Alignment:
Q  18 ggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtga 117  Q
    ||||| |||||||||||  | || ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |||||||  || |||| ||    
T  6705 ggtttgtggtatagggttttagtggcgagatatggtgaggaggcagggaggttggaggttgggggctggagtgcttcatcatggtggagagaggtagcga 6606  T
Q  118 agattagggatgg 130  Q
    |||||||||||||    
T  6605 agattagggatgg 6593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 6824022 - 6823916
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 123  Q
    |||||||||||  |||  |||||||||| |||||||||||||||||||||||| ||||||||||||  |||| | ||||||||||| |||| ||||||||    
T  6824022 tggtatagggttttggcggcgagatatgttgaggaggcagggaggttggaggttgggggccggagtgtttcaccgtggtggaaggaggtagcgaagatta 6823923  T
Q  124 gggatgg 130  Q
    |||||||    
T  6823922 gggatgg 6823916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 43310875 - 43310790
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 104  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  |||||||||||||| ||||||||||||  ||| |||||||||    
T  43310875 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 43310790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 11196962 - 11196855
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 123  Q
    ||||||||||| ||||||||| | |||||||||   |  ||| |||||||||| ||||||||||||  |||||||||||||  ||||||||  |||||||    
T  11196962 tggtatagggttctggtagcgcggtatggtgagacagttgggcggttggaggttgggggccggagtgtttcatcttggtggcgggaagtagctaagatta 11196863  T
Q  124 gggatggg 131  Q
    ||||||||    
T  11196862 gggatggg 11196855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 26146831 - 26146761
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 89  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  26146831 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagt 26146761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 10689170 - 10689087
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtg 103  Q
    |||| |||||||||||| |||| | |||||||||||| |||||  |||||||||||||  |||||||||||  ||| ||||||||    
T  10689170 gtttatggtatagggtgttggtggtgagatatggtgatgaggctaggaggttggaggt-tggggccggagtggttcttcttggtg 10689087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 15018249 - 15018181
Alignment:
Q  63 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||| |||||||| |||  ||| |||||||||  ||| |||| || |||||||||||||    
T  15018249 gggaggttggaggttgggggccgaagttgttcttcttggtggcgggaggtagggaggattagggatggg 15018181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 25193714 - 25193590
Alignment:
Q  9 gatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagg 108  Q
    ||||||||||| || |||||| ||||| |||| | | | |||||||||||||| |||||||||||||||||||||||||||  ||| | |||||||| ||    
T  25193714 gatagagatgggttctggtatcgggtgttggtggtgcggtatggtgaggaggctgggaggttggaggtagggggccggagtgattcttattggtggaggg 25193615  T
Q  109 aagtagtgaagattagggatgggat 133  Q
    |  ||| ||||||||||||||||||    
T  25193614 agatagcgaagattagggatgggat 25193590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 29721439 - 29721553
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 123  Q
    |||||||||||  |||| |||||||||||||||||| | |||||||||||||||||||||||||||   || | |||||||| |||  ||| ||||||||    
T  29721439 tggtatagggttttggtggcgagatatggtgaggagcctgggaggttggaggtagggggccggagtgtctcttattggtggagggagatagcgaagatta 29721538  T
Q  124 gggatgggatgggtg 138  Q
    |||||||||| ||||    
T  29721539 gggatgggattggtg 29721553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 15439742 - 15439632
Alignment:
Q  10 atagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 109  Q
    ||||||||||||| |||||||||||| |||  |||   |||||||||||||||||||||||       |||||||||||   ||| | ||||||||||||    
T  15439742 atagagatggtttatggtatagggtgttgggggcgcagtatggtgaggaggcagggaggtt-------gggggccggagcggttctttttggtggaagga 15439650  T
Q  110 agtagtgaagattaggga 127  Q
    ||||||||||||||||||    
T  15439649 agtagtgaagattaggga 15439632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 15531046 - 15530936
Alignment:
Q  10 atagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 109  Q
    ||||||||||||| |||||||||||| |||  |||   |||||||||||||||||||||||       |||||||||||   ||| | ||||||||||||    
T  15531046 atagagatggtttatggtatagggtgttgggggcgcagtatggtgaggaggcagggaggtt-------gggggccggagcggttctttttggtggaagga 15530954  T
Q  110 agtagtgaagattaggga 127  Q
    ||||||||||||||||||    
T  15530953 agtagtgaagattaggga 15530936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 37165650 - 37165753
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 123  Q
    ||||||||||| ||||| ||||||||||| |||||||  ||| |||||||||| ||||||||||||  |||  ||||||||| |||  ||| ||||||||    
T  37165650 tggtatagggtactggtggcgagatatggcgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagatta 37165749  T
Q  124 ggga 127  Q
    ||||    
T  37165750 ggga 37165753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 6245653 - 6245495
Alignment:
Q  71 ggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtt 170  Q
    |||||| ||||||||||||  |||||||||||||  ||||||||||||||||||||||||| | ||||| |  || ||| |||||||  || || ||||     
T  6245653 ggaggttgggggccggagtgtttcatcttggtggcgggaagtagtgaagattagggatggggtaggtgatgcagatgggggttggtt--cgcagagggtg 6245556  T
Q  171 tcgagaagggtaggtaatggcgtgtctacttacttttggtatgacaggtggcttggtgatg 231  Q
    |||| || ||| ||  |||||     ||||| |||||||||||| ||||||||||||||||    
T  6245555 tcgaaaaaggtgggggatggcactagtactttcttttggtatgataggtggcttggtgatg 6245495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 36492997 - 36492928
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 88  Q
    |||| |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| |||||||||||    
T  36492997 gtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggag 36492928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 12332461 - 12332411
Alignment:
Q  22 tttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 72  Q
    |||||||||||||| |||| |||||||||||||||||||  ||||||||||    
T  12332461 tttggtatagggtgttggtggcgagatatggtgaggaggatgggaggttgg 12332411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 12341178 - 12341072
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 123  Q
    |||| |||||| ||||| ||||| |||||||||||||| ||| |||||||||| ||| ||||||||  |||   |||||||| | |  ||| ||||||||    
T  12341178 tggtttagggtactggtggcgaggtatggtgaggaggctgggcggttggaggttgggagccggagtgtttctaattggtggaggtagatagcgaagatta 12341079  T
Q  124 gggatgg 130  Q
    |||||||    
T  12341078 gggatgg 12341072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 36025132 - 36025026
Alignment:
Q  24 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 123  Q
    |||||||| ||  |||| |||||||||||||||||||| ||| |||||||||| |||| |||||||  |||  ||| |||||  ||  ||| ||||||||    
T  36025132 tggtatagagttttggtggcgagatatggtgaggaggctgggcggttggaggttggggaccggagtgtttccactttgtggagagagttagcgaagatta 36025033  T
Q  124 gggatgg 130  Q
    |||||||    
T  36025032 gggatgg 36025026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 18187775 - 18187672
Alignment:
Q  6 gtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgga 105  Q
    |||||||||| |||||| |||||||||| |||||| |   ||||||||||||||| |||| ||||||  || | ||||||||||  ||| |  |||||||    
T  18187775 gtagatagaggtggtttgtggtatagggagctggttgattgatatggtgaggaggtagggcggttggcagttgagggccggagtggttctttgtggtgga 18187676  T
Q  106 agga 109  Q
    ||||    
T  18187675 agga 18187672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 6901481 - 6901413
Alignment:
Q  63 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||| |||||||| |||  ||| ||||||||| ||||||||| || |||| | ||||||    
T  6901481 gggaggttggaggttgggggccgaagtggttcttcttggtggcaggaagtagggaggattcgtgatggg 6901413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 17659403 - 17659339
Alignment:
Q  63 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 127  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||||||    
T  17659403 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattaggga 17659339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 36157726 - 36157658
Alignment:
Q  63 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 131  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| || | || |||||| ||||||    
T  36157726 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtggcgaggattagagatggg 36157658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 67694 - 67611
Alignment:
Q  21 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 104  Q
    ||||||||||||||| || |  | || ||||||||||||||||||||||||||||| |||||| |||||  ||| |||||||||    
T  67694 ttttggtatagggtgttgatttctaggtatggtgaggaggcagggaggttggaggttgggggctggagtggttcttcttggtgg 67611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 55278 - 55208
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 89  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  | |||||||||||| ||||||||||||    
T  55278 gtttatggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggggccggagt 55208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 143356 - 143426
Alignment:
Q  19 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 89  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  | |||||||||||| ||||||||||||    
T  143356 gtttatggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggggccggagt 143426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 63824 - 63876
Alignment:
Q  20 tttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 72  Q
    |||||||||||| ||| |||| |||||||||| ||||||||||||||||||||    
T  63824 tttttggtatagagtgttggtggcgagatatgatgaggaggcagggaggttgg 63876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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