View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_234 (Length: 245)

Name: NF10233A_low_234
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_234
NF10233A_low_234
[»] chr5 (9 HSPs)
chr5 (12-235)||(26099226-26099449)
chr5 (21-70)||(25224814-25224863)
chr5 (21-70)||(25288970-25289019)
chr5 (126-214)||(25224928-25225016)
chr5 (126-214)||(25289084-25289172)
chr5 (126-214)||(25728232-25728320)
chr5 (21-70)||(25728385-25728434)
chr5 (135-208)||(25222582-25222655)
chr5 (135-208)||(25286738-25286811)
[»] chr1 (1 HSPs)
chr1 (126-214)||(25618044-25618132)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 26099449 - 26099226
Alignment:
Q  12 ggagcctcagtcaagattccgaagatacattctaaagtttactacttcccacaaggtcacttaaaacatgtctcaacgcacacaatcatcacccttcttc 111  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  26099449 ggagcctcagtcaagattccgaagctacattctaaagtttactacttcccacaaggtcacttaaaacatgtctcccctcacacaatcatcacccttcttc 26099350  T
Q  112 attgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  26099349 attgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacacagatgaagtctttgccaaactgctcctcactcccgt 26099250  T
Q  212 aacggaaggccatggccatgaaca 235  Q
    || ||| ||||||||||| |||||    
T  26099249 aatggatggccatggccacgaaca 26099226  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 25224814 - 25224863
Alignment:
Q  21 gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca 70  Q
    ||||||||||||||||| || |||||||||||||||||||||| ||||||    
T  25224814 gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca 25224863  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 25288970 - 25289019
Alignment:
Q  21 gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca 70  Q
    ||||||||||||||||| || |||||||||||||||||||||| ||||||    
T  25288970 gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca 25289019  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 25224928 - 25225016
Alignment:
Q  126 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 214  Q
    |||||| | |||||| ||||  ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| |||||||||||    
T  25224928 tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac 25225016  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 25289084 - 25289172
Alignment:
Q  126 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 214  Q
    |||||| | |||||| ||||  ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| |||||||||||    
T  25289084 tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac 25289172  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 25728320 - 25728232
Alignment:
Q  126 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 214  Q
    |||||| | |||||| ||||  ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| |||||||||||    
T  25728320 tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac 25728232  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 25728434 - 25728385
Alignment:
Q  21 gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca 70  Q
    ||||||||||| ||||| || |||||||||||||||||||||| ||||||    
T  25728434 gtcaagattccaaagattcactctaaagtttactacttcccacgaggtca 25728385  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 25222655 - 25222582
Alignment:
Q  135 tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc 208  Q
    |||||||| ||||||||| ||||| |||||||| ||| | | || || ||||| |||||||| |||||||||||    
T  25222655 tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc 25222582  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 25286811 - 25286738
Alignment:
Q  135 tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc 208  Q
    |||||||| ||||||||| ||||| |||||||| ||| | | || || ||||| |||||||| |||||||||||    
T  25286811 tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc 25286738  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 25618044 - 25618132
Alignment:
Q  126 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 214  Q
    |||||| | |||||||||||  |||| |||||||||| ||||||| || | |||||||| || |||||||| |||||||||||||||||    
T  25618044 tccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctcctcactcccgtaac 25618132  T

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