View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_236 (Length: 245)
Name: NF10233A_low_236
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_236 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 240552 - 240796
Alignment:
| Q |
1 |
aaattaaatccattttactttgctttcaaatttaggtgttacactcttatcggcttcacacatggaatttgctgtattgttctattttatgtctctattt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
240552 |
aaattaaatccattttactttgctttcacatttaggtgttacactcttatcggcttcacacatggaatttgctgtattgttctattttatgtctctattt |
240651 |
T |
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| Q |
101 |
aactaaggtgctaaaattttaccaaaactgagactcggaagattgcaatatgagcaaagtgcaagtcgtattctatattggtaaagtgtctcacaagtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
240652 |
aactaaggtgctaaaattttaccaaaactgagactcggaagattgcaatatgagcaaagtgcaagtcgtattctatattggtaaagtgtctcacaagtca |
240751 |
T |
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| Q |
201 |
gctatcccatgtgaaataaatcatccaacaccccatattcttcga |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
240752 |
gctatcccatgtgaaataaatcatccaacaccccatatttttcga |
240796 |
T |
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