View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_237 (Length: 245)
Name: NF10233A_low_237
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_237 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 8344 - 8573
Alignment:
| Q |
16 |
ggacatcactgtatccgagttataaccaattagagtatcgcatgatttagaagtgtattgtgggagtgaaaagggaataaaactttaccgttccctttgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8344 |
ggacatcactgtatccgagttataaccaattagagtatcgcatgatttagaagtgtattgtgggagtgaaaagggaataaaactttaccgttccctttgt |
8443 |
T |
|
| Q |
116 |
tttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatactt |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8444 |
ttttgaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatactt |
8543 |
T |
|
| Q |
216 |
atgtttctcagtgttggttttgatgcatta |
245 |
Q |
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||||| || ||||||||||||||||||||| |
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| T |
8544 |
atgttccttagtgttggttttgatgcatta |
8573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 100 - 241
Target Start/End: Complemental strand, 11663569 - 11663428
Alignment:
| Q |
100 |
ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatg |
199 |
Q |
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|||| ||||||||||| ||| ||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
11663569 |
ttacagttccctttgtatttggaacttctccgagaattgttgctaagagggttgattttcctgagccaacttctccacagatagccaccttttgcccacg |
11663470 |
T |
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| Q |
200 |
tctaacctccatacttatgtttctcagtgttggttttgatgc |
241 |
Q |
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| T |
11663469 |
tctaacgtccaaatttatgtttcttagtgttggatttgatgc |
11663428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 245
Target Start/End: Original strand, 11710015 - 11710169
Alignment:
| Q |
91 |
aataaaactttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccacctt |
190 |
Q |
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||||||| |||| ||||||||||| || ||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11710015 |
aataaaagcttacagttccctttgtattaggaacctctccaagaattgttgctaataccgttgattttcctgagccaacttctccacaaatagccacctt |
11710114 |
T |
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| Q |
191 |
ttgcccatgtctaacctccatacttatgtttctcagtgttggttttgatgcatta |
245 |
Q |
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| T |
11710115 |
ttgcccacgtctaacatccaagtttatgtttcttagtgttggctttgatgcatta |
11710169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 11618753 - 11618615
Alignment:
| Q |
100 |
ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatg |
199 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||| | || ||||||||||| || ||||||||||||||||| ||||||||||||||||| |
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| T |
11618753 |
ttacagttccctttgttttagaaacttctccaagaattgttgctaagatggttgattttccggaaccaacttctccacaaatggccaccttttgcccatg |
11618654 |
T |
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| Q |
200 |
tctaacctccatacttatgtttctcagtgttggttttga |
238 |
Q |
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|||||| || | | ||||||| || |||| ||| ||||| |
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| T |
11618653 |
tctaacatctaaatttatgttccttagtgatggctttga |
11618615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 11673525 - 11673645
Alignment:
| Q |
125 |
ttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgtttctc |
224 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||| |||| | ||||| |||| |
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| T |
11673525 |
ttctccaagaattgttgctaagatggttgattttcctgagccaacttcgccacaaatagccaccctttgtccatgtttaacgtccaaatttatgcttctt |
11673624 |
T |
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| Q |
225 |
agtgttggttttgatgcatta |
245 |
Q |
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|||||||| ||| ||||||| |
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| T |
11673625 |
agtgttggctttattgcatta |
11673645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 245
Target Start/End: Original strand, 11631501 - 11631624
Alignment:
| Q |
122 |
aacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttt |
221 |
Q |
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||||||||||||||||||||| | ||| |||||||| || ||||||||||||||||| |||||||| ||||| || || ||||||| | | ||||||| |
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| T |
11631501 |
aacttctccaagaattgttgctaagagggttgatttgccggagccaacttctccacagatagccactttttggccgtgcttaacctctaaatttatgttc |
11631600 |
T |
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| Q |
222 |
ctcagtgttggttttgatgcatta |
245 |
Q |
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| ||| ||||| |||||||||||| |
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| T |
11631601 |
cgcagggttggctttgatgcatta |
11631624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 12093565 - 12093638
Alignment:
| Q |
123 |
acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgccc |
196 |
Q |
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| T |
12093565 |
acttctccgagaattgctgctaataaagttgattttcctgagccaacttctccacaaatagctatcttttgccc |
12093638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 11756370 - 11756309
Alignment:
| Q |
123 |
acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagc |
184 |
Q |
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|||||||| ||||||| ||| | | |||||||||||||||||||||||||||||||||||| |
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| T |
11756370 |
acttctccgagaattgctgctaataaagttgattttcctgagccaacttctccacaaatagc |
11756309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 11739337 - 11739395
Alignment:
| Q |
123 |
acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaat |
181 |
Q |
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|||||||| ||||| | ||| | |||||||||||| ||||||||||||||||||||||| |
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| T |
11739337 |
acttctccgagaatcgctgctaagagagttgatttacctgagccaacttctccacaaat |
11739395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 13127 - 12997
Alignment:
| Q |
78 |
ggagtgaaaagggaataaaactttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccac |
177 |
Q |
| |
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||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| | || |||||||| || |||||||||| ||| | |
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| T |
13127 |
ggagtcaaaagggaataaaaacttacaattccctttgttttaggaacttctccaagaattgttgctaaaagggttgatttgccagagccaacttttccgc |
13028 |
T |
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| Q |
178 |
aaatagccaccttttgcccatgtctaacctc |
208 |
Q |
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| |||||||||||||| |||||||||||||| |
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| T |
13027 |
agatagccaccttttggccatgtctaacctc |
12997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 31291038 - 31291126
Alignment:
| Q |
100 |
ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccacc |
188 |
Q |
| |
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|||| ||| |||| ||||| |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |||||| |
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| T |
31291038 |
ttacagttaccttagttttataaacttctccaagaattgttgttaatagtgttgattttcctgagccaacttctccacaaatggccacc |
31291126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 27957851 - 27957923
Alignment:
| Q |
109 |
cctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaat |
181 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| | || ||| ||||||||||| |||||||||||||||| |
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| T |
27957851 |
cctttgttttataaacttctccaagaattgttgctaatagcgttaattttcctgagacaacttctccacaaat |
27957923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 44812126 - 44812017
Alignment:
| Q |
122 |
aacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttt |
221 |
Q |
| |
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||||||||||||||||| || | ||||| |||||| ||||||||||||||||||||||| || |||||||| ||| | |||| |||| | |||| ||| |
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| T |
44812126 |
aacttctccaagaattgctgataagagagatgatttgcctgagccaacttctccacaaatcgcgaccttttgtccagatttaacttccaaatttatattt |
44812027 |
T |
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| Q |
222 |
ctcagtgttg |
231 |
Q |
| |
|
|||| ||||| |
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| T |
44812026 |
ctcaatgttg |
44812017 |
T |
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