View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_239 (Length: 245)
Name: NF10233A_low_239
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_239 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 31700739 - 31700972
Alignment:
| Q |
7 |
gatatgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaag |
106 |
Q |
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| T |
31700739 |
gatatgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaag |
31700838 |
T |
|
| Q |
107 |
tggtacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagaccatagtga |
206 |
Q |
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| T |
31700839 |
tggtacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactattgtga |
31700938 |
T |
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| Q |
207 |
ccactatggtctat-cggagtcaatggatactgc |
239 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
31700939 |
ccactatggtctatgtggagtcaatggatactgc |
31700972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 44 - 235
Target Start/End: Original strand, 31723329 - 31723521
Alignment:
| Q |
44 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| | || |||||||| || |
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| T |
31723329 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaagtggtacttaaccaaaccagtaacgatcgtccacgata |
31723428 |
T |
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| Q |
144 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagaccatagtgaccactatggtctat-cggagtcaatggata |
235 |
Q |
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| T |
31723429 |
cgtatggtcaaaggacgacaaatcatggaatatttattcaagaataccaggagacgattgtgaccattatggtcgatgtggagtcaatggata |
31723521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 31716051 - 31716276
Alignment:
| Q |
11 |
tgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggt |
110 |
Q |
| |
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||||||||||| | ||| || |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||| |
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| T |
31716051 |
tgaagcctaatgatattttcagttacaattttgtctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggt |
31716150 |
T |
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| Q |
111 |
acttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagaccatagtgaccac |
210 |
Q |
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|||||||||||||||| | || |||||||||||| ||||||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| |
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| T |
31716151 |
acttaaccaaaccagtaaagatcgtccacgctacgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccat |
31716250 |
T |
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| Q |
211 |
tatggtctat-cggagtcaatggata |
235 |
Q |
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||||||| || |||||||||||||| |
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| T |
31716251 |
tatggtcaatgtggagtcaatggata |
31716276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 31721925 - 31722150
Alignment:
| Q |
11 |
tgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggt |
110 |
Q |
| |
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||||||||||| | ||| || |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||| |
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| T |
31721925 |
tgaagcctaatgatattttcagttacaattttgtctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggt |
31722024 |
T |
|
| Q |
111 |
acttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagaccatagtgaccac |
210 |
Q |
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|||||||||||||||| | || |||||||||||| ||||||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| |
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| T |
31722025 |
acttaaccaaaccagtaaagatcgtccacgctacgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccat |
31722124 |
T |
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| Q |
211 |
tatggtctat-cggagtcaatggata |
235 |
Q |
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||||||| || |||||||||||||| |
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| T |
31722125 |
tatggtcaatgtggagtcaatggata |
31722150 |
T |
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