View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_243 (Length: 244)
Name: NF10233A_low_243
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_243 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 14609417 - 14609649
Alignment:
| Q |
1 |
ttcttctgagaagccttggaagcctttgtgccgaaaaagatcagttccaaatggcatcataagtccatataggttggttattatatatgcaacatgtaaa |
100 |
Q |
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| T |
14609417 |
ttcttctgagaagccttggaagcctttgtgccgaaaaagatcagttccaaatggcatcataagtccatataggttggttattatatatgcaatatgtaaa |
14609516 |
T |
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| Q |
101 |
tgttgtatataactaaaaataattactataggattaaatgtatatcttagcgatttagttataattgcatctgattgtgcctatatttcattaatttgca |
200 |
Q |
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| T |
14609517 |
tgttgtatataactaaaaataattactataggattaaatgtatatcttagcgatttagttataattgcatctgattgtgcctatatttcattaatttgca |
14609616 |
T |
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| Q |
201 |
ggttgcttattggtgttcgcttagtagtgatgt |
233 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
14609617 |
ggttgcttattggtgttcgcttagtagtaatgt |
14609649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 14599090 - 14599023
Alignment:
| Q |
8 |
gagaagccttggaagcctttgtgccgaaaaagatcagttccaaatggcatcataagtccatataggtt |
75 |
Q |
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||||| ||||||||||||||||| ||| || | || |||||||||||||||||| |||||||||||| |
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| T |
14599090 |
gagaaaccttggaagcctttgtgtagaagaacaccaattccaaatggcatcataactccatataggtt |
14599023 |
T |
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