View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_244 (Length: 244)
Name: NF10233A_low_244
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_244 |
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| [»] scaffold0103 (1 HSPs) |
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| [»] scaffold0561 (1 HSPs) |
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| [»] scaffold0226 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 13486200 - 13486416
Alignment:
| Q |
21 |
ctaaagagcccattaatttctcaaactgaacaacatttggcaccttagttaaaatatctgcctgttgttgttcatttgctacatactcatggttcataac |
120 |
Q |
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| T |
13486200 |
ctaaagagccccttaatttctcaaactgaacaacatttggcaccttagttaaaatatctgcctgttgttgttcatttgctacatactcatggttcataac |
13486299 |
T |
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| Q |
121 |
ttaatattcaacatgttccttgatgaaatgatgatgaatgtcaatgtgctcggttctactatgttgaatgagattcttagaaatattaatagcactcaag |
220 |
Q |
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| T |
13486300 |
ttaatattcaacatgttccgtgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatagcactcaag |
13486399 |
T |
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| Q |
221 |
ttgttgcagtattatgt |
237 |
Q |
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|| ||||||||| |||| |
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| T |
13486400 |
tttttgcagtataatgt |
13486416 |
T |
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Target: scaffold0103 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 29710 - 29566
Alignment:
| Q |
21 |
ctaaagagcccattaatttctcaaactgaacaacatttggcaccttagttaaaatatctgcctgttgttgttcatttgctacatactcatggttcataac |
120 |
Q |
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|||| |||||| |||| |||||||| || |||||||||| |||||||| ||||||| || ||||||||||| ||| ||| ||||| |||||||||| |
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| T |
29710 |
ctaacgagccccttaacttctcaaattgcacaacatttgaaaccttagtgaaaatatatgttagttgttgttcagttgttacccactcaaggttcataac |
29611 |
T |
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| Q |
121 |
ttaatattcaacatgttccttgatgaaatgatgatgaatgtcaat |
165 |
Q |
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| T |
29610 |
tttaccttcaacatgttccgtgatgaaatgatgacaaatgtcaat |
29566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 22889274 - 22889211
Alignment:
| Q |
141 |
tgatgaaatgatgatgaatgtcaatgtgctcggttctactatgttgaatgagattcttagaaat |
204 |
Q |
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| T |
22889274 |
tgatgaaatgatgtcgaatgtcaatgtgctttgttctgctatgttgaataagattcttggaaat |
22889211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0561 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0561
Description:
Target: scaffold0561; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 8212 - 8287
Alignment:
| Q |
141 |
tgatgaaatgatgatgaatgtcaatgtgctcggttctactatgttgaatgagattcttagaaatattaatagcact |
216 |
Q |
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||||||||||||| |||| |||||||||| ||||| ||||||||||| ||||||| ||||| || |||||||| |
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| T |
8212 |
tgatgaaatgatgtcgaatatcaatgtgctttgttctgctatgttgaataggattcttggaaatgttgatagcact |
8287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 15774 - 15703
Alignment:
| Q |
141 |
tgatgaaatgatgatgaatgtcaatgtgctcggttctactatgttgaatgagattcttagaaatattaatag |
212 |
Q |
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||||||||||||| |||||| ||||||||| ||||| ||||||||||| | ||||| |||||||| |||| |
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| T |
15774 |
tgatgaaatgatgttgaatgacaatgtgctttgttctgctatgttgaatagggttcttggaaatattgatag |
15703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 25168 - 25097
Alignment:
| Q |
141 |
tgatgaaatgatgatgaatgtcaatgtgctcggttctactatgttgaatgagattcttagaaatattaatag |
212 |
Q |
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||||||||||||| |||||| ||||||||| ||||| ||||||||||| | ||||| |||||||| |||| |
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| T |
25168 |
tgatgaaatgatgttgaatgacaatgtgctttgttctgctatgttgaatagggttcttggaaatattgatag |
25097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 18590421 - 18590488
Alignment:
| Q |
143 |
atgaaatgatgatgaatgtcaatgtgctcggttctactatgttgaatgagattcttagaaatattaat |
210 |
Q |
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|||||||||||| |||||||||| |||| | || |||||||||||||||||||| || |||||||| |
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| T |
18590421 |
atgaaatgatgacgaatgtcaatatgctttttccttctatgttgaatgagattcttggatatattaat |
18590488 |
T |
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